View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_244 (Length: 245)

Name: NF1498_low_244
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_244
NF1498_low_244
[»] chr1 (1 HSPs)
chr1 (1-238)||(5607174-5607410)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-238)||(15209-15445)
[»] chr4 (1 HSPs)
chr4 (1-238)||(51261742-51261978)
[»] chr2 (2 HSPs)
chr2 (1-238)||(39830025-39830261)
chr2 (1-140)||(43448355-43448494)
[»] chr8 (2 HSPs)
chr8 (1-238)||(7125070-7125312)
chr8 (1-238)||(43320108-43320344)
[»] chr6 (3 HSPs)
chr6 (141-234)||(15608050-15608142)
chr6 (135-238)||(11733678-11733780)
chr6 (1-87)||(11733781-11733867)
[»] chr7 (1 HSPs)
chr7 (117-234)||(24250681-24250797)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5607174 - 5607410
Alignment:
Q  1 ataaatgtgtgtcagaggagcagtcagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5607174 ataaatgtgtgtcagaggagcagtcagcgtttgtcgagggccgttccatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaa 5607273  T
Q  101 gacgaagggatggcgaggggaattggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5607274 gacgaagggatggcgaggggaattggctctcaagattgatattaacaaggcttatgataaagtgggtt-gggggtttcttcgtggtgtgcttatgcgaat 5607372  T
Q  201 ggggttcaatgagaaatggatctagtggatgatgatgt 238  Q
    |||||||||||||||||||||| |||||||||||||||    
T  5607373 ggggttcaatgagaaatggatccagtggatgatgatgt 5607410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15209 - 15445
Alignment:
Q  1 ataaatgtgtgtcagaggagcagtcagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| || | |||| | ||||||||||||||| ||||||||||||||||||  |||||||||||    
T  15209 ataaatgtgtgtcagaggagcagtcagcgtttgtcgagggtcgctccatattggacaacgcgttaatagctaccgagataatccacttaatgaagaggaa 15308  T
Q  101 gacgaagggatggcgaggggaattggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaat 200  Q
     || ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||| |||||||||| |||    
T  15309 aacaaagggatggagaggggaattggctctcaagattgatattagcaaggcttatgatagagtggatt-gggggtttcttcgtggcgtgcttatgcaaat 15407  T
Q  201 ggggttcaatgagaaatggatctagtggatgatgatgt 238  Q
    ||| |||| | ||||||||||  |||||||||||||||    
T  15408 gggattcagtaagaaatggattcagtggatgatgatgt 15445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 51261978 - 51261742
Alignment:
Q  1 ataaatgtgtgtcagaggagcagtcagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaa 100  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||  ||| | ||||||  ||||||| |||| |||||||  ||||| |||||||||||    
T  51261978 ataaatgcgtgtcagaggaacagtcagcgtttatcgagggccgttctatattggacaacatgttaatagctactgagataactcactcaatgaagaggaa 51261879  T
Q  101 gacgaagggatggcgaggggaattggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaat 200  Q
    ||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||| |||||||||| ||||    
T  51261878 gacaaagggatggagaggggaattgactctcaagattgatattagcaaggcttatgatagagtggatt-gggggtttcttcgtgatgtgcttatgtgaat 51261780  T
Q  201 ggggttcaatgagaaatggatctagtggatgatgatgt 238  Q
    ||||||| | |||||||||||| |||||||||||||||    
T  51261779 ggggttcgaagagaaatggatccagtggatgatgatgt 51261742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 39830261 - 39830025
Alignment:
Q  1 ataaatgtgtgtcagaggagcagtcagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaa 100  Q
    ||||||||||||||||||||||||| |||||||| |||| ||  | |||||| |||||| | |||||| |||||||||||||||||||  ||||||||||    
T  39830261 ataaatgtgtgtcagaggagcagtcggcgtttgttgaggaccactccatactggacaacacattaatagctaccgagataatccactcagtgaagaggaa 39830162  T
Q  101 gacgaagggatggcgaggggaattggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaat 200  Q
     || || |||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| || |||||||| ||||||||| ||||||||||||||    
T  39830161 aacaaacggatggagaggggaattggctctcaagattgatattagcaaggcttatgatagagt-ggatggggggtatcttcgtggcgtgcttatgcgaat 39830063  T
Q  201 ggggttcaatgagaaatggatctagtggatgatgatgt 238  Q
    |||||||| ||||||||| ||  |||||||||||||||    
T  39830062 ggggttcagtgagaaatgaattaagtggatgatgatgt 39830025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 43448355 - 43448494
Alignment:
Q  1 ataaatgtgtgtcagaggagcagtcagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaa 100  Q
    ||||||||||||||| |||||| ||| ||||| |||||||||| | ||||||||||||| | |||||| ||||| | |||| |||||| |||||||| ||    
T  43448355 ataaatgtgtgtcaggggagcaatcatcgtttatcgagggccgctccatactagacaacacattaatagctaccaaaataacccactcaatgaagagaaa 43448454  T
Q  101 gacgaagggatggcgaggggaattggctctcaagattgat 140  Q
    ||||||||||||| ||||||||||| ||||| | ||||||    
T  43448455 gacgaagggatggagaggggaattgactctcgatattgat 43448494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 7125070 - 7125312
Alignment:
Q  1 ataaatgtgtgtcagaggagcagtcagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatga------a 94  Q
    ||||||||||||||||||| |||||||||||||||||||| || | |||| | ||||||||||||||| ||||||||||||||||||| ||||      |    
T  7125070 ataaatgtgtgtcagaggatcagtcagcgtttgtcgagggtcgctccatattggacaacgcgttaatagctaccgagataatccactcaatgacaatgaa 7125169  T
Q  95 gaggaagacgaagggatggcgaggggaattggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttat 194  Q
    |||||| || ||||||||| |||||||||||||||||||||||||||||| || ||||||||||| ||||| || |||||||||||||||| ||||||||    
T  7125170 gaggaaaacaaagggatggagaggggaattggctctcaagattgatattagcatggcttatgatagagtggatt-gggggtttcttcgtggcgtgcttat 7125268  T
Q  195 gcgaatggggttcaatgagaaatggatctagtggatgatgatgt 238  Q
    ||||||||| |||| ||||||||||||  | |||||||||||||    
T  7125269 gcgaatgggattcagtgagaaatggattcaatggatgatgatgt 7125312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 43320344 - 43320108
Alignment:
Q  1 ataaatgtgtgtcagaggagcagtcagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaa 100  Q
    |||||||||||| ||||||||||||| | ||| || || | || | |||||| || |||||||||||  ||||||||||||| ||||| |||||||||||    
T  43320344 ataaatgtgtgttagaggagcagtcaacttttttcaagagtcgctccatactggataacgcgttaatcgctaccgagataattcactcaatgaagaggaa 43320245  T
Q  101 gacgaagggatggcgaggggaattggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaat 200  Q
    ||| ||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||| ||| | || |||||||||||||||||||||||||||||||    
T  43320244 gacaaagggatggagaggagaattggctctcaagattgatattagcaaggcgtatgatagagtagatt-gggggtttcttcgtggtgtgcttatgcgaat 43320146  T
Q  201 ggggttcaatgagaaatggatctagtggatgatgatgt 238  Q
    ||| |||| ||||||||||||  |||||||||||||||    
T  43320145 gggattcagtgagaaatggatacagtggatgatgatgt 43320108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 15608142 - 15608050
Alignment:
Q  141 attaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaatggatctagtggatgatg 234  Q
    |||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15608142 attagcaaggcttatgatagagtggattggggg-tttcttcgtggtgtgcttatgagaatggggttcaatgagaaatggatctagtggatgatg 15608050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 11733780 - 11733678
Alignment:
Q  135 attgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaatggatctagtggatgatg 234  Q
    |||||||||| |||| ||||||||| ||||| || |||| ||||||||||||| ||||| | ||||||| |||| ||||||||||||| | || ||||||    
T  11733780 attgatattagcaagacttatgatagagtggattcgggg-tttcttcgtggtgggcttaagtgaatgggattcagtgagaaatggatccactgaatgatg 11733682  T
Q  235 atgt 238  Q
    ||||    
T  11733681 atgt 11733678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 11733867 - 11733781
Alignment:
Q  1 ataaatgtgtgtcagaggagcagtcagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccact 87  Q
    |||||||||||||||||||||||||| ||||| | || ||||  | |||| | ||||| || |||||| |||| |||||||||||||    
T  11733867 ataaatgtgtgtcagaggagcagtcaacgttttttgaaggcctctccatattggacaatgcattaatagctactgagataatccact 11733781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 24250681 - 24250797
Alignment:
Q  117 ggggaattggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaa 216  Q
    ||||||||| |||||||||||||||||| ||| |||||||||| ||||| || ||||||||||||  |  ||||||||| |||||||||||| |||||||    
T  24250681 ggggaattgactctcaagattgatattagcaaagcttatgatagagtggatt-gggggtttcttccggacgtgcttatgtgaatggggttcagtgagaaa 24250779  T
Q  217 tggatctagtggatgatg 234  Q
    |||||  |||||||||||    
T  24250780 tggattcagtggatgatg 24250797  T

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