View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_245 (Length: 245)
Name: NF1498_low_245
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_245 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 8206306 - 8206123
Alignment:
| Q |
1 |
agctaaggcattattttttgcttgcagcttattacagatgtgaatattgctgttgctgttgaagctatccaggctattggcaatcttgctcgtggattac |
100 |
Q |
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| T |
8206306 |
agctaaggcattattttttgcttgcagcttattacagatgtgaatattgctgttgctgttgaagctatccaggctattggcaatcttgctcgtggattac |
8206207 |
T |
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| Q |
101 |
gaaccaatttttctacgagctctcgttttttattgcctgttttacttgtaagtactatttgaaagccattgttattttgttttt |
184 |
Q |
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| T |
8206206 |
gaaccaatttttctgcgagctctcgttttttattgcctgttttacttgtaagtactatttgacagccattgttatttggttttt |
8206123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 8203726 - 8203658
Alignment:
| Q |
169 |
ttgttattttgtttttaatattaccgattaagtacatttctctacaagatttagaaacttaacatgtct |
237 |
Q |
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| T |
8203726 |
ttgttattttgtttttaatattaccgattaagtacatttctctacaagatttagaaacttaacatgtct |
8203658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 42361046 - 42360827
Alignment:
| Q |
9 |
cattattttttgcttgcagcttattacagatgtgaatattgctgttgctgttgaagctatccaggctattggcaatcttgctcgtggattacgaaccaat |
108 |
Q |
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| T |
42361046 |
cattatattttgcttgcagcttattacagatgtgaatattgctgttgctgttgaagctgtccaggctattggcaatcttgctcgtggattaagaaccaat |
42360947 |
T |
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| Q |
109 |
ttttctacgagctctcgttttttattgcctgttttacttgtaagtactatttgaaagccattgttattttgtttttaatattaccgattaagtacatttc |
208 |
Q |
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| T |
42360946 |
ttttctgcgagctctcgttttttattgcctgttttacttgtaagtactattcaacagccattgttattttgttattaaccttaccggttgagtacacttc |
42360847 |
T |
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| Q |
209 |
tctacaagatttagaaactt |
228 |
Q |
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|||| || ||||||||||| |
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| T |
42360846 |
tctaatagttttagaaactt |
42360827 |
T |
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