View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_246 (Length: 244)
Name: NF1498_low_246
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_246 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 52085307 - 52085492
Alignment:
| Q |
42 |
tatgcctaatataaactctttcattaaatgaaaaatttacaagttcaactaaatgttactatcatgaataacattcagagaccactctgttcaactttct |
141 |
Q |
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| T |
52085307 |
tatgcctaatataaactctttcattaaatgaaaaatttacaagttccactaaatgttactatcatgaataacattcagagaccgctctgttcaactttct |
52085406 |
T |
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| Q |
142 |
acttctcaccttccacctgaatgtaaat-------ctctttctttttcaatttcatcaatcatacaaatttatttaattaaattat |
220 |
Q |
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| T |
52085407 |
acttctcaccttccacctgaatgtaaatctataacctctttctttttcaatttcatcaatcatacaaatttatttaattaaattat |
52085492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 51854077 - 51854133
Alignment:
| Q |
111 |
aacattcagagaccactctgttcaactttctacttctcaccttccacctgaatgtaa |
167 |
Q |
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| T |
51854077 |
aacattccgtgaccactctgttcaactttccacttctcaccttccatctgaatgtaa |
51854133 |
T |
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