View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_25 (Length: 579)
Name: NF1498_low_25
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 52 - 562
Target Start/End: Complemental strand, 10036898 - 10036389
Alignment:
| Q |
52 |
agttctgtacctttccatctctgatagaaatctcagcaactcctgcaaaacagaaaactctcaaggagatttcccgggggacaacttatacattgttaaa |
151 |
Q |
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| T |
10036898 |
agttctttacctttccatctctgatagaaatctcagcaactcctgcaaaacagaaaactctcaaggagatttcccaggggacaacttatacattgttaaa |
10036799 |
T |
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| Q |
152 |
atctcaaaataaatatataaaaaagacgaagaagaaagaatgtaataccatcagggcctgcaacaatgttacccaaatcaccggcatgtcgctcatcatc |
251 |
Q |
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| T |
10036798 |
atctcaaaataaatatataaaaaagacgaagaagaaagaatgtaataccatcagggcctgcaacaatgttacccaaatcaccggcatgtcgctcatcatc |
10036699 |
T |
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| Q |
252 |
ggtaggagctccgtgatccttcttgagtggattgaagtgaggacctgaggtaaagaagtcaaagccaaaattgaatcgaaacacttgcatgtttgattat |
351 |
Q |
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| T |
10036698 |
ggtaggagctccgtgatccttcttgagtggattgaagtgaggacctgaggtaaagaagtcaaagccaaaattgaatcgaaacacttgcatgtttgattat |
10036599 |
T |
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| Q |
352 |
cttatttttaatgaaataatc-acgnnnnnnncttcaaacatctggttctgacttctgaccacacgagcttgnnnnnnnnnnnnccggtttgaaaaaata |
450 |
Q |
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| T |
10036598 |
cttatttttaatgaaataatcaatgtttttttcttcaaacatttggttctgacttctgaccacacgagcttg--atatatatatccggtttgaaaaaata |
10036501 |
T |
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| Q |
451 |
gaaatgatcgaaggtaaagcacatgtgccagtgtcgtgtcagtacaaattcaatccgaaacgttggtgatacattattgttaatatattgaataatggga |
550 |
Q |
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| T |
10036500 |
gaagtgatcgaaggtaaagcacatgtggcagtgtcgtgtcagtacaaattcaatccgaaacgttggtgatacattattgttaatatattgaataatgaga |
10036401 |
T |
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| Q |
551 |
aaagtggaaacc |
562 |
Q |
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| T |
10036400 |
aaagtggaaacc |
10036389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 10037116 - 10037076
Alignment:
| Q |
14 |
agaataatagcgattgttcaaatttcgctatgttatatagt |
54 |
Q |
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| T |
10037116 |
agaataatagcgattgttcaaatttcgttatgttatatagt |
10037076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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