View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_250 (Length: 242)
Name: NF1498_low_250
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_250 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 9796285 - 9796491
Alignment:
| Q |
11 |
catcatcacctatcataactccttccgcacctccacctttgacgcccccacctacgacacctccttccacaccaccgtcaattcctacgacacctccttc |
110 |
Q |
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| T |
9796285 |
catcaccacctatcataactccttccgcacctccaccttcgacacccccacctacgacacctccttccacaccaccgtcaattcctaggacacctccttc |
9796384 |
T |
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| Q |
111 |
tacaccaccaccgattccggtcacacccccgcaaaattgtaaccttttaaacttgaacatttgcgcaaacatattgaataatgcagttgggctcaaccca |
210 |
Q |
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| T |
9796385 |
tacaccaccaccgattccggtgacacccccgcaaaattgtaaccttttaaacttgaacatttgcgccaaagtattgaataatgtagttgtgctcaaccca |
9796484 |
T |
|
| Q |
211 |
cgaaaca |
217 |
Q |
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||||||| |
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| T |
9796485 |
cgaaaca |
9796491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 9802286 - 9802492
Alignment:
| Q |
11 |
catcatcacctatcataactccttccgcacctccacctttgacgcccccacctacgacacctccttccacaccaccgtcaattcctacgacacctccttc |
110 |
Q |
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| T |
9802286 |
catcaccacctatcataactccttccgcacctccaccttcgacacccccacctacgacacctccttccacaccaccgtcaattcctaggacacctccttc |
9802385 |
T |
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| Q |
111 |
tacaccaccaccgattccggtcacacccccgcaaaattgtaaccttttaaacttgaacatttgcgcaaacatattgaataatgcagttgggctcaaccca |
210 |
Q |
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| T |
9802386 |
tacaccaccaccgattccggtgacacccccgcaaaattgtaaccttttaaacttgaacatttgcgccaaagtattgaataatgtagttgtgctcaaccca |
9802485 |
T |
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| Q |
211 |
cgaaaca |
217 |
Q |
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||||||| |
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| T |
9802486 |
cgaaaca |
9802492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 9757151 - 9757218
Alignment:
| Q |
61 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc |
128 |
Q |
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| T |
9757151 |
cctaggacacctccttcgacaccaccaccaattcctaggacacctccttttacaccaccaccaattcc |
9757218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 9757118 - 9757185
Alignment:
| Q |
61 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc |
128 |
Q |
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| T |
9757118 |
cctaggacacctcctaccacaccaccaccaaatcctaggacacctccttcgacaccaccaccaattcc |
9757185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 9756998 - 9757065
Alignment:
| Q |
61 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc |
128 |
Q |
| |
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| T |
9756998 |
cctaggacacctcctaccacaccaccgacaaatcctaggacacctcctaccataccaccaccaattcc |
9757065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 9756865 - 9756918
Alignment:
| Q |
69 |
acctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc |
122 |
Q |
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||||||| |||||||||| ||| ||||| |||||||||||| ||||||||||| |
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| T |
9756865 |
acctcctaccacaccaccaccaaatcctatgacacctccttcgacaccaccacc |
9756918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 9757031 - 9757092
Alignment:
| Q |
61 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc |
122 |
Q |
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|||| |||||||||| ||| |||||| ||||||||| |||||||||| | ||||||||||| |
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| T |
9757031 |
cctaggacacctcctaccataccaccaccaattcctaggacacctcctaccacaccaccacc |
9757092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 9756775 - 9756831
Alignment:
| Q |
66 |
gacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc |
122 |
Q |
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|||||||||| ||||||||||| ||| ||| | |||||||||| | ||||||||||| |
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| T |
9756775 |
gacacctcctaccacaccaccgacaaatcccaggacacctcctaccacaccaccacc |
9756831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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