View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_253 (Length: 240)
Name: NF1498_low_253
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_253 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 10014350 - 10014525
Alignment:
| Q |
54 |
tggtttagacattctaaagtgcttctaacctactattttgatttgatgatatgcattcgtgcatcttatgtctatcatgaagtttctttttatttaagaa |
153 |
Q |
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| T |
10014350 |
tggtttagacattctaaagtgcttctaacctactatttcgatttgatgatatgcattagtgcatcttatgtctatcatgaagttcctttttatttaagaa |
10014449 |
T |
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| Q |
154 |
ttgagttcctaagattgacatggatcaatggtcatcttgttctttaatatattagttctcatgagatgtttttgat |
229 |
Q |
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| T |
10014450 |
ttgagttcctaagattgacatggatcaatggtcatcttgttctttaatatattagttctcatgagatgtttttgat |
10014525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 20421148 - 20421324
Alignment:
| Q |
54 |
tggtttagacattctaaagtgcttctaacctactattttgatttgatgatatgcattcgtgcatcttatgtctatcatgaagtttctttttatttaagaa |
153 |
Q |
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| T |
20421148 |
tggtttagacattctaaagtgcttctaacctacaattttgatttgatgacatgcatttgtgcttcttatgtatatcatgaagttccttttaatttaagaa |
20421247 |
T |
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| Q |
154 |
ttgagttcctaagattgacatggatcaatggtc-atcttgttctttaatatattagttctcatgagatgtttttgat |
229 |
Q |
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| T |
20421248 |
ttgtgttccttagattgacatggatcattggtcaatcttgttctataatattttagttcttatgagatgtttttgat |
20421324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 10014231 - 10014286
Alignment:
| Q |
4 |
attcattgacttgaaattctaatacacctgatctacgacctcaagtacagtggttt |
59 |
Q |
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| T |
10014231 |
attcattgacttgaaattctaatacacctgatctacgacctcaagtacagttgttt |
10014286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 20421022 - 20421072
Alignment:
| Q |
9 |
ttgacttgaaattctaatacacctgatctacgacctcaagtacagtggttt |
59 |
Q |
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| T |
20421022 |
ttgacttgaaattctgatacacctgatctacgacctcaaatacagttgttt |
20421072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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