View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_257 (Length: 239)
Name: NF1498_low_257
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_257 |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 48925356 - 48925261
Alignment:
| Q |
69 |
aagtcaagtcaatttgccatagttacattgagnnnnnnnn-agtcatttaaccgttttttaggcgttaaatctattgcataataattttgccaaat |
163 |
Q |
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| T |
48925356 |
aagtcaagtcaatttgccatagttacattgagtttttttttagtcatttaaccgttttttaggcgttaaatctattgcataataattttgccaaat |
48925261 |
T |
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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 48925202 - 48925138
Alignment:
| Q |
159 |
caaatgatatataattcactcttcttccttcttttccaacaatgaacatgagcaagctggctgtt |
223 |
Q |
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| T |
48925202 |
caaatgatatataattcactcttcttccttcttttccaacaatgaacatgagcaagatggctgtt |
48925138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48925454 - 48925406
Alignment:
| Q |
1 |
tttatgtttctcaacttccatgctttcatttccccttcacctccaggta |
49 |
Q |
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| T |
48925454 |
tttatgtttctcaacttccatgctttcatttccccttcacctccaggta |
48925406 |
T |
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