View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_26 (Length: 577)
Name: NF1498_low_26
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 6e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 216 - 450
Target Start/End: Complemental strand, 12061616 - 12061382
Alignment:
| Q |
216 |
tccactataacttgaattcgatttttaaaattcctcttttctaacggataacgaataaataatgtttgctaataataagttttaattttacaagaccctt |
315 |
Q |
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| T |
12061616 |
tccactataacttgaattcgatttttaaaattcctcttttataaccggtaacgaataaataatgtgtgctaataataagttttaattttacaagagcctt |
12061517 |
T |
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| Q |
316 |
aatttttatgtgattatctcacttacggttcaannnnnnnnaaggaaattattgtaacttgtaatatatttataaagactaaaaacagtatataacccaa |
415 |
Q |
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| T |
12061516 |
aatttttatgtcattatctcacttacagttcaattttttttaaggaaattattgtaatttgtagtatatttataaagactaaaaacagtatataacccaa |
12061417 |
T |
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| Q |
416 |
aatgtaatttttgctcttaaataaaatataaaaca |
450 |
Q |
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| T |
12061416 |
aatgtaatttttgctcttaaataaaatataaaaca |
12061382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 441 - 577
Target Start/End: Complemental strand, 12061358 - 12061222
Alignment:
| Q |
441 |
atataaaacagacttaaatagatattaatgactagttttacttaccaacgatattttgactcttgaaaaacagaaccaaccggtattcaaaatctgaaca |
540 |
Q |
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| T |
12061358 |
atataaaacagacttaaatagatattaatgactagttttacttaccaacgatattttgactcttgaaaaacagaaccaaccggtattcaaaatctgaaca |
12061259 |
T |
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| Q |
541 |
aatcatacagtcaaaaaatataaatcaacaaactgtc |
577 |
Q |
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| T |
12061258 |
aatcatacagtcaaaaaatataaatcaacaaactgtc |
12061222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 12061781 - 12061670
Alignment:
| Q |
46 |
taaaaatgtttgaaccttctttattnnnnnnntataatctaatatagattcaacgtaggttaaaccatagacctaagtcggtcattcaccattgttacat |
145 |
Q |
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| T |
12061781 |
taaaaatgtttgaaccttctttattaaaaaaatataatttaatatagattcaacgtaggttaaaccatagaccta----tgttattcatcgttgttacat |
12061686 |
T |
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| Q |
146 |
aaatatgaactgatcc |
161 |
Q |
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| T |
12061685 |
aattatgaactgatcc |
12061670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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