View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_low_260 (Length: 238)
Name: NF1498_low_260
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_260 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32832442 - 32832664
Alignment:
| Q |
1 |
ttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagcgacctaactaacttgtattttgcactttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32832442 |
ttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagcgacctaactaacttgtattttgcggtttt |
32832541 |
T |
|
| Q |
101 |
ccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaactttgatctttctttaccgggataccaacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32832542 |
acttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaactttgatctttctttaccgggataccaacca |
32832641 |
T |
|
| Q |
201 |
tttgacagaatctctgtgcttag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32832642 |
tttgacagaatctctgtgcttag |
32832664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32845723 - 32845945
Alignment:
| Q |
1 |
ttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagcgacctaactaacttgtattttgcactttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32845723 |
ttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagcgacctaactaacttgtattttgcggtttt |
32845822 |
T |
|
| Q |
101 |
ccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaactttgatctttctttaccgggataccaacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32845823 |
acttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaactttgatctttctttaccgggataccaacca |
32845922 |
T |
|
| Q |
201 |
tttgacagaatctctgtgcttag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32845923 |
tttgacagaatctctgtgcttag |
32845945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17932201 - 17931979
Alignment:
| Q |
1 |
ttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagcgacctaactaacttgtattttgcactttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17932201 |
ttccatctgaatcttcttcccttctacaagcaaaataagccttgtcatcaaaggctctttgtgttctaagcgacctaactaacttgtattttgcggtttt |
17932102 |
T |
|
| Q |
101 |
ccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaactttgatctttctttaccgggataccaacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17932101 |
acttgcttcttttttgtttgagagaagaattgctgcactacccattctaaagctacagttaagatgcaactttgatctttctttaccgggataccaacca |
17932002 |
T |
|
| Q |
201 |
tttgacagaatctctgtgcttag |
223 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
17932001 |
tttgacaaaatctctgtgcttag |
17931979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 46188723 - 46188502
Alignment:
| Q |
1 |
ttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagcgacctaactaacttgtattttgcactttt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||| || |||||||| ||||||||||||||||| | ||||| |||| ||||||||| |||| |
|
|
| T |
46188723 |
ttccatctgaatcttcttcccttatacaggataaataagctttatcatcaaaagctctttgtgttctaagtgtcctaagtaacaaatattttgcattttt |
46188624 |
T |
|
| Q |
101 |
ccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaactttgatctttctttaccgggataccaacca |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
46188623 |
acttgcttcttttttgtttgaaagaagaattgctgcacttcccattctaaagagacagttaataagcaactttgatttttccttacctggataccaaccg |
46188524 |
T |
|
| Q |
201 |
tttgacagaatctctgtgctta |
222 |
Q |
| |
|
| |||| |||||||||||||| |
|
|
| T |
46188523 |
tgggacaaaatctctgtgctta |
46188502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University