View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_27 (Length: 573)
Name: NF1498_low_27
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 41308559 - 41308831
Alignment:
| Q |
10 |
tagcatagggtgagattttataaccttgaaatgaatcaagacatgcccataatggatgccaatggtgcctgagaggattgctgatatggaactatcaaaa |
109 |
Q |
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| T |
41308559 |
tagcatagggtgagattttataaccttgaaatgaatcaagacgtgcccataatggatgccaatggtgcctgagaggattgctgatatggaactatcaaaa |
41308658 |
T |
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| Q |
110 |
agtaaaactcctttaagatatttctaataatatatatcagatgctactcaatacaaattttagagacaaatacctcaataagccctctggttcaaatgga |
209 |
Q |
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| T |
41308659 |
agtaaaactcctttaagatatttctaataatatatatcagatgctactcaatacaaattttagagacaaatacctcaataagccctctggttcaaatgga |
41308758 |
T |
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| Q |
210 |
gcaagacaccagcttggagcatcatcgcgaaatggaccctcacttggggaactaaatgtgcatgcctacaaat |
282 |
Q |
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| T |
41308759 |
gcaagacaccagcttggagcatcatcacgaaatggaccctcacttggggaactaaatgtgcatgcctacaaat |
41308831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 279 - 508
Target Start/End: Original strand, 41308884 - 41309113
Alignment:
| Q |
279 |
aaatattcagaccaatgccattttatttagaacaattttatcaacttgtgatcaatttttgacctgaaccttgtgtattttggttatacatataattact |
378 |
Q |
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| T |
41308884 |
aaatattcagaccaatgccattttatttagaacaattttatcaacttgtgatcaatttttgacctgaaccttgtgtattttggttatacatataattact |
41308983 |
T |
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| Q |
379 |
cacctttaaccgtctccaaacaggttgagaataaagatgattaaccccccaagtttgtctatcaacatatccaacagcgttacatgcaggaccaaggtgc |
478 |
Q |
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| T |
41308984 |
cacctttaaccgtctccaaacaggttgagaataaagatgattaaccccccaagtttgtctatcaacatatccaacagcgttacatgcaggaccaaggtgc |
41309083 |
T |
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| Q |
479 |
cctctcatcccacatatcacctaatatacg |
508 |
Q |
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| T |
41309084 |
cctctcatcccacatatcacctaatatacg |
41309113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 41322622 - 41322703
Alignment:
| Q |
22 |
agattttataaccttgaaatgaatcaagacatgcccataatggatgccaatggtgcctgagaggattgctgatatggaacta |
103 |
Q |
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| T |
41322622 |
agattttgtaaccttgaaatgaatcaagacatgcccataatggatgccgatggttcccgagaggattgccgatatggaacta |
41322703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 41323284 - 41323380
Alignment:
| Q |
181 |
acctcaataagccctctggttcaaatggagcaagacaccagcttggagcatcatcgcgaaatggaccctcacttggggaactaaatgtgcatgccta |
277 |
Q |
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| T |
41323284 |
acctcaacaagccctctggttcaaatggagcacgacaccaacttggagcatcttcgcgaattggaccttcgcctggagaactgaatgtgcattccta |
41323380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 390 - 504
Target Start/End: Original strand, 41323618 - 41323732
Alignment:
| Q |
390 |
gtctccaaacaggttgagaataaagatgattaaccccccaagtttgtctatcaacatatccaacagcgttacatgcaggaccaaggtgccctctcatccc |
489 |
Q |
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| T |
41323618 |
gtctccaaacaggatgtatataaaagtggttaaccccccaaacttgcctatcgacatatccaacagcgttacatgcagggcctctgtgtcctctcatccc |
41323717 |
T |
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| Q |
490 |
acatatcacctaata |
504 |
Q |
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| T |
41323718 |
acatatcacctaata |
41323732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 494
Target Start/End: Complemental strand, 27658058 - 27657940
Alignment:
| Q |
376 |
actcacctttaaccgtctccaaacaggttgagaataaagatgattaaccccccaagtttgtctatcaacatatccaacagcgttacatgcaggaccaagg |
475 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| | | |
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| T |
27658058 |
actcacctttaagcgactccaaacaggttgagagtaaagatgattaaccccccacatttgtctatccacatacccaacagcgttacatgcaggacctaag |
27657959 |
T |
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| Q |
476 |
tgccctctcatcccacata |
494 |
Q |
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| T |
27657958 |
tgtcctctaatcccacata |
27657940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 27660016 - 27659943
Alignment:
| Q |
30 |
taaccttgaaatgaatcaagacatgcccataatggatgccaatggtgcctgagaggattgctgatatggaacta |
103 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||| || || ||||| |||||||| |||||| |
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| T |
27660016 |
taaccttgaaatgaatcaagacatgtccatagtggatgccaatggtcccagataggatagctgatatagaacta |
27659943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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