View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_270 (Length: 233)

Name: NF1498_low_270
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_270
NF1498_low_270
[»] chr3 (2 HSPs)
chr3 (20-218)||(16456497-16456695)
chr3 (13-65)||(7404058-7404110)
[»] chr8 (3 HSPs)
chr8 (13-65)||(25641050-25641102)
chr8 (13-65)||(27813899-27813951)
chr8 (15-59)||(4743891-4743935)
[»] chr7 (1 HSPs)
chr7 (13-65)||(4683056-4683108)
[»] chr4 (1 HSPs)
chr4 (13-65)||(53302423-53302475)
[»] chr2 (4 HSPs)
chr2 (13-65)||(30269097-30269149)
chr2 (13-65)||(31332079-31332131)
chr2 (13-65)||(31338809-31338861)
chr2 (13-65)||(31481970-31482020)
[»] chr1 (4 HSPs)
chr1 (111-185)||(44135088-44135155)
chr1 (15-65)||(47694242-47694292)
chr1 (140-185)||(44126547-44126588)
chr1 (181-209)||(44135212-44135240)
[»] chr5 (2 HSPs)
chr5 (13-66)||(37190451-37190504)
chr5 (13-65)||(7413064-7413116)
[»] chr6 (1 HSPs)
chr6 (13-65)||(30824996-30825048)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 16456695 - 16456497
Alignment:
Q  20 gtgcaggagaatcacattactaagattagagaagtaaataaaatttaactaatggtcatatgtatgtagtagtatctatctatattctaaatgttcaact 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16456695 gtgcaggagaatcacattactaagattagagaagtaaataaaatttaactaaaggtcatatgtatgtagtagtatctatctatattctaaatgttcaact 16456596  T
Q  120 cttccctgtagtagtatatggttctcttattttcttttatatatattttacccatgaaaccttaatgcatttgaagtaatattaagatgttgaaatttt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456595 cttccctgtagtagtatatggttctcttattttcttttatatatattttacccatgaaaccttaatgcatttgaagtaatattaagatgttgaaatttt 16456497  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 7404110 - 7404058
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    ||||||| ||||||||||||||||| || ||||||||| ||||||||| ||||    
T  7404110 agcatagatgcaggagaatcacatttctgagattagaggagtaaataatattt 7404058  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 25641050 - 25641102
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  25641050 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaattt 25641102  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 27813899 - 27813951
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  27813899 agcatagatgcaggagaatcacattgctgagattagagaagtaaataaaattt 27813951  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 4743891 - 4743935
Alignment:
Q  15 cataggtgcaggagaatcacattactaagattagagaagtaaata 59  Q
    |||||||||| |  |||||||||||| ||||||||||||||||||    
T  4743891 cataggtgcacggcaatcacattactgagattagagaagtaaata 4743935  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 4683108 - 4683056
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  4683108 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaattt 4683056  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 53302423 - 53302475
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  53302423 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaattt 53302475  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 30269097 - 30269149
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  30269097 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaattt 30269149  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 31332131 - 31332079
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  31332131 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaattt 31332079  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 31338861 - 31338809
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  31338861 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaattt 31338809  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 31481970 - 31482020
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    |||||||| |||| ||||||||||||||  |||||||||||||||||||||||    
T  31481970 agcataggggcagaagaatcacattact--gattagagaagtaaataaaattt 31482020  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 44135088 - 44135155
Alignment:
Q  111 tgttcaactcttccctgtagtagtatatggttctcttattttcttttatatatattttacccatgaaaccttaat 185  Q
    ||||||||||||||||||||   |||||||||||||||||||||||    |||| ||||||||||||||||||||    
T  44135088 tgttcaactcttccctgtag---tatatggttctcttattttcttt----tataatttacccatgaaaccttaat 44135155  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 47694292 - 47694242
Alignment:
Q  15 cataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    |||||||| || | |||||||||||  ||||||||||||||||||||||||    
T  47694292 cataggtgtagaataatcacattacggagattagagaagtaaataaaattt 47694242  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 44126547 - 44126588
Alignment:
Q  140 gttctcttattttcttttatatatattttacccatgaaaccttaat 185  Q
    |||||||||||||||||||||    |||||||||||||||||||||    
T  44126547 gttctcttattttcttttata----ttttacccatgaaaccttaat 44126588  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 44135212 - 44135240
Alignment:
Q  181 ttaatgcatttgaagtaatattaagatgt 209  Q
    |||||||||||||||||||||||||||||    
T  44135212 ttaatgcatttgaagtaatattaagatgt 44135240  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 37190451 - 37190504
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattta 66  Q
    ||||||| ||| |||||||||||||||  | ||| |||||||||||||||||||    
T  37190451 agcatagatgctggagaatcacattacagatattcgagaagtaaataaaattta 37190504  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 7413064 - 7413116
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    ||||||| ||| ||||||||||||||| || ||| |||||||||| |||||||    
T  7413064 agcatagatgctggagaatcacattacaaatattcgagaagtaaaaaaaattt 7413116  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 30824996 - 30825048
Alignment:
Q  13 agcataggtgcaggagaatcacattactaagattagagaagtaaataaaattt 65  Q
    ||||||| |||||||||||||||||  | ||||||||  ||||||||||||||    
T  30824996 agcatagatgcaggagaatcacattgatgagattagattagtaaataaaattt 30825048  T

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