View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_274 (Length: 232)
Name: NF1498_low_274
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_274 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 39763189 - 39762995
Alignment:
| Q |
20 |
gaaggcagagatatggccttatgtgccatacaacatggtggttcatccatacactgctccttcttatgacaagaaggctcctcctggatatgtaaggaga |
119 |
Q |
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| T |
39763189 |
gaaggcagagatatggccttatgtgccatacaacatggtggttcatccatacgctgctccttcttatgacaagaaggctcctcctggatatgtaaggaga |
39763090 |
T |
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| Q |
120 |
ttggaaaccactggaactgttagagcatatgaagagccacacctcaccaccatgtttagtgatgaaaacccaaatgcctgctccattatgtagat |
214 |
Q |
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| T |
39763089 |
ttggaaaccactggaactgttagagcatatgaagagccacacctcaccaccatgtttagtgatgaaaacccaaatgcctgctccattatgtagat |
39762995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 38127620 - 38127516
Alignment:
| Q |
20 |
gaaggcagagatatggccttatgtgccatacaacatggtggttcatccatacactgctccttcttatgacaagaaggctcctcctggatatgtaaggaga |
119 |
Q |
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|||||| || || ||||||||||||||||||||| |||||| ||| ||||| ||| | |||||||||||||||||||||||||||| ||||| |||||| |
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| T |
38127620 |
gaaggctgaaatttggccttatgtgccatacaacttggtggctcaaccatatgctgtttcttcttatgacaagaaggctcctcctggttatgtgaggaga |
38127521 |
T |
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| Q |
120 |
ttgga |
124 |
Q |
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|||| |
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| T |
38127520 |
gtgga |
38127516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 10652987 - 10653036
Alignment:
| Q |
162 |
ctcaccaccatgtttagtgatgaaaacccaaatgcctgctccattatgta |
211 |
Q |
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| T |
10652987 |
ctcaccaacatgtttagtgatgaaaaccctaatgcatgttccatcatgta |
10653036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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