View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_275 (Length: 229)

Name: NF1498_low_275
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_275
NF1498_low_275
[»] chr4 (1 HSPs)
chr4 (1-211)||(39131990-39132200)
[»] chr7 (7 HSPs)
chr7 (1-211)||(18658698-18658908)
chr7 (1-211)||(21130536-21130746)
chr7 (1-211)||(21111576-21111786)
chr7 (120-211)||(21123408-21123499)
chr7 (27-172)||(21098492-21098637)
chr7 (27-172)||(21108111-21108256)
chr7 (63-111)||(29213204-29213252)
[»] chr3 (12 HSPs)
chr3 (39-149)||(26751165-26751275)
chr3 (39-175)||(26713967-26714103)
chr3 (39-181)||(26737197-26737339)
chr3 (39-149)||(26744240-26744350)
chr3 (18-111)||(47212442-47212535)
chr3 (39-181)||(26698809-26698951)
chr3 (39-181)||(26733972-26734114)
chr3 (42-111)||(26690345-26690414)
chr3 (42-111)||(26731656-26731725)
chr3 (42-111)||(26694506-26694575)
chr3 (15-145)||(47193355-47193485)
chr3 (90-145)||(9792530-9792585)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 39131990 - 39132200
Alignment:
Q  1 caataaagagattgaatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||    
T  39131990 caataaagagattgaatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcatcggaaggctcaatcacatgaacttaattgaaatgtg 39132089  T
Q  101 gggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaacatgcttgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39132090 gggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaacatgcttgat 39132189  T
Q  201 tggagtaaaag 211  Q
    |||||||||||    
T  39132190 tggagtaaaag 39132200  T

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Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 18658908 - 18658698
Alignment:
Q  1 caataaagagattgaatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtg 100  Q
    ||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  18658908 caataaagagattaaatgaagctaaacaaggagaaggagaatttcttgctgaagtaagcatcattggacggcttaaccacatgaacttgattgatatgtg 18658809  T
Q  101 gggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaacatgcttgat 200  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||  |||||     
T  18658808 gggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgac 18658709  T
Q  201 tggagtaaaag 211  Q
    |||||||||||    
T  18658708 tggagtaaaag 18658698  T

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Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 21130746 - 21130536
Alignment:
Q  1 caataaagagattgaatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtg 100  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||    
T  21130746 caataaagagattgaatgaagctaaacaaggagaaggagagtttcttgctgaagtaagcatcattgaaaagcttaaccacatgaatttgattgaaatgtg 21130647  T
Q  101 gggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaacatgcttgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||| |||||||||||||| ||||| ||||  ||||||    
T  21130646 gggatattgtgttgaaggtaagcatagaattttggtatatgagtacatggaaaatggttctttagcggaaaatctttcatccaaaaccaacacacttgat 21130547  T
Q  201 tggagtaaaag 211  Q
    |||| ||||||    
T  21130546 tggactaaaag 21130536  T

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Target: chr7; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 21111786 - 21111576
Alignment:
Q  1 caataaagagattgaatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtg 100  Q
    ||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||| |||||||||||||||||||||| ||||||||    
T  21111786 caataaagagattaaatgaagctaaacaaggagaaggagaatttcttgccgaagtaagtatcattggacggcttaaccacatgaacttgatagaaatgtg 21111687  T
Q  101 gggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaacatgcttgat 200  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||  ||||||    
T  21111686 gggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgat 21111587  T
Q  201 tggagtaaaag 211  Q
    |||||||||||    
T  21111586 tggagtaaaag 21111576  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 21123499 - 21123408
Alignment:
Q  120 aagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaacatgcttgattggagtaaaag 211  Q
    |||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  21123499 aagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaag 21123408  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 21098492 - 21098637
Alignment:
Q  27 caaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcata 126  Q
    ||||| ||||| || ||||| ||||||||| | ||||||||||||||||| |||||||| ||||| ||||||||||||||||| | ||| || ||  |||    
T  21098492 caaggtgaaggtgaatttctagctgaagtaggaatcattggaaggcttaatcacatgaatttgatcgaaatgtggggatattgcgctgagggaaaatata 21098591  T
Q  127 gaattttggtatatgagtacatgaagaatgactctttagctgaaaa 172  Q
    || | ||||| || ||||||||| | ||||  |||||||| |||||    
T  21098592 gactattggtttacgagtacatggaaaatggttctttagccgaaaa 21098637  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 21108111 - 21108256
Alignment:
Q  27 caaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcata 126  Q
    ||||| ||||| || ||||| ||||||||| | ||||||||||||||||| |||||||| ||||| ||||||||||||||||| | ||| || ||  |||    
T  21108111 caaggagaaggtgaatttctagctgaagtaggaatcattggaaggcttaatcacatgaatttgatcgaaatgtggggatattgcgctgagggaaaatata 21108210  T
Q  127 gaattttggtatatgagtacatgaagaatgactctttagctgaaaa 172  Q
    || | ||||| || ||||||||| | ||||  |||||||| |||||    
T  21108211 gactattggtttacgagtacatggaaaatggttctttagccgaaaa 21108256  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 29213252 - 29213204
Alignment:
Q  63 attggaaggcttaaccacatgaacttgattgaaatgtggggatattgtg 111  Q
    ||||||| ||||||||||||||| ||||||||| ||||||| |||||||    
T  29213252 attggaaagcttaaccacatgaatttgattgaattgtggggttattgtg 29213204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 26751275 - 26751165
Alignment:
Q  39 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 138  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||  |||||||| ||||||| ||| || ||||||||| | ||||| |    
T  26751275 gagtttcttgccgaagttagcatcattggaaggcttaaccacatgaatttgattggtatgtggggttattgtgctgagggaaagcatagattgttggttt 26751176  T
Q  139 atgagtacatg 149  Q
    |||||||||||    
T  26751175 atgagtacatg 26751165  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 26714103 - 26713967
Alignment:
Q  39 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 138  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| ||| || || |||| | | ||||| |    
T  26714103 gagtttcttgcagaagttagcatcattggaaggcttaaccacatgaatttgattggaatgtggggttattgtgctgagggaaaacataaattgttggttt 26714004  T
Q  139 atgagtacatgaagaatgactctttagctgaaaatct 175  Q
    ||||||||||| | ||||   |||||||||| |||||    
T  26714003 atgagtacatggaaaatggtactttagctgataatct 26713967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 26737339 - 26737197
Alignment:
Q  39 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 138  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| || |||| ||||||||| ||||||| ||| || || |||| | | ||||| |    
T  26737339 gagtttcttgcagaagttagcatcattggaaggcttaaccacatgaatttaattggaatgtggggttattgtgctgagggaaaacataaattgttggttt 26737240  T
Q  139 atgagtacatgaagaatgactctttagctgaaaatctttcatc 181  Q
    ||||||||||| | ||||   |||||||||| ||||| |||||    
T  26737239 atgagtacatggaaaatggtactttagctgataatctctcatc 26737197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 26744350 - 26744240
Alignment:
Q  39 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||||||| ||| || || |||||| | ||||| |    
T  26744350 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttaattggtatgtggggctattgtgctgagggaaaacatagattgttggttt 26744251  T
Q  139 atgagtacatg 149  Q
    | |||| ||||    
T  26744250 acgagtgcatg 26744240  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 47212535 - 47212442
Alignment:
Q  18 gaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtg 111  Q
    ||||| |||||||| |||| ||||||||| || |||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||||    
T  47212535 gaagcaaatcaaggcgaagaagagtttctcgcagaagtaagcagcattggaaagcttaaccacatgaatttgattgaaatgtggggttattgtg 47212442  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 26698951 - 26698809
Alignment:
Q  39 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 138  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||  || || || || ||| | ||||| |    
T  26698951 gagtttcttgctgaagttagcatcattggaaggcttaatcacatgaatttgataggaatgtggggttattgtgccgagggaaaacacagattgttggttt 26698852  T
Q  139 atgagtacatgaagaatgactctttagctgaaaatctttcatc 181  Q
    ||||||||||| | ||||   |||||||||| ||||| |||||    
T  26698851 atgagtacatggaaaatggtactttagctgataatctctcatc 26698809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 26734114 - 26733972
Alignment:
Q  39 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 138  Q
    |||||||||| |||||| |||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||  || || || || ||| | ||||| |    
T  26734114 gagtttcttgttgaagttagcatcattggaaggcttaatcacatgaatttgataggaatgtggggttattgtgccgagggaaaacacagattgttggttt 26734015  T
Q  139 atgagtacatgaagaatgactctttagctgaaaatctttcatc 181  Q
    ||||||||||| | ||||   |||||||||| ||||| |||||    
T  26734014 atgagtacatggaaaatggtactttagctgataatctctcatc 26733972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 26690345 - 26690414
Alignment:
Q  42 tttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtg 111  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| |||||||  |||||||| |||||||    
T  26690345 tttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtg 26690414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 26731656 - 26731725
Alignment:
Q  42 tttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtg 111  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| |||||||  |||||||| |||||||    
T  26731656 tttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtg 26731725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 26694506 - 26694575
Alignment:
Q  42 tttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtg 111  Q
    |||||||||||| | ||| ||||||||||||||||||||||||| |||||||  |||||||| |||||||    
T  26694506 tttcttgctgaacttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtg 26694575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 47193355 - 47193485
Alignment:
Q  15 aatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttg 114  Q
    ||||||||| |||| || ||||  || ||||| |||||| ||||||  ||||| | | | ||||| ||||| || ||||| |||||||||||||||||||    
T  47193355 aatgaagctcatcagggagaagctgaatttctagctgaaataagcacaattggtatgttgaaccatatgaatttaattgatatgtggggatattgtgttg 47193454  T
Q  115 aaggtaagcatagaattttggtatatgagta 145  Q
    |||| || |||||  ||||||| ||||||||    
T  47193455 aagggaaacataggcttttggtctatgagta 47193485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 9792530 - 9792585
Alignment:
Q  90 attgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagta 145  Q
    ||||| ||||||||||||||||||||||| ||  ||||| ||||||| ||||||||    
T  9792530 attgatatgtggggatattgtgttgaagggaaaaatagacttttggtttatgagta 9792585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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