View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_277 (Length: 228)
Name: NF1498_low_277
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_277 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 35629477 - 35629279
Alignment:
| Q |
14 |
aagaaaatgtatccatttaaattgccaaattcttattaccttttttgttgtggatttagccatggttggcttgcaacaatggataaaagttatgccataa |
113 |
Q |
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| T |
35629477 |
aagaaaatgtatccatttaaattgccaaatccttattaccatatttgttgtggatttagccatggttggcttgcaacaatggataaaagttatgccataa |
35629378 |
T |
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| Q |
114 |
caatattgcatccttctaagaatgttgctcctattagtcttccaaccctcggtcgatcatatacaagattacctgaggtcgggtacaaggtcactcttt |
212 |
Q |
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| T |
35629377 |
caatattgcatccttctaagaatgttgctcctattagtcttccaaccctcggtcgatcatatacaagattatctgaggtcgggtaccaggtcactcttt |
35629279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 35625668 - 35625616
Alignment:
| Q |
111 |
taacaatattgcatccttctaagaatgttgctcctattagtcttccaaccctc |
163 |
Q |
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|||| |||||| |||||| |||||||||||||| ||||||||||||| ||||| |
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| T |
35625668 |
taactatattgaatccttttaagaatgttgctcatattagtcttccacccctc |
35625616 |
T |
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