View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_278 (Length: 228)
Name: NF1498_low_278
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_278 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 26803066 - 26803259
Alignment:
| Q |
18 |
gaaaagaatgatgaaaagggcacatttttatttacctgtaaaatttggttagcattatcaacaactcctctaactttacttatatcaatgccatattctg |
117 |
Q |
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| T |
26803066 |
gaaaagaatgatgaaaagggcacatttttatttacctgtaaaatttggttagcattatcaacaactcctctaactttacttatatcaatgccatattctg |
26803165 |
T |
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| Q |
118 |
aactaatagacatcatttgcttatcagtcaaattggccacaatttctgcatcaaattctgaaaatgcagccctgcacataaatttaaaattagt |
211 |
Q |
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| T |
26803166 |
aactaatagacatcatttgcttatcagtcaaattggccacaatttctgcatcaaattctgaaaatgcagccctgcacataaatttaaaattagt |
26803259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 30343352 - 30343498
Alignment:
| Q |
65 |
gttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
164 |
Q |
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| T |
30343352 |
gttagcattatcaacaactcctctaacttttcttatgtcaatgctatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
30343451 |
T |
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| Q |
165 |
gcatcaaattctgaaaatgcagccctgcacataaatttaaaattagt |
211 |
Q |
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| T |
30343452 |
gcatcaaattctgaaaatgcatctctgcacataaatttaaagttagt |
30343498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 18416377 - 18416520
Alignment:
| Q |
48 |
tttacctgtaaaatttggttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtca |
147 |
Q |
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| T |
18416377 |
tttacctctaaaattcgattagcattatcaacaactcctcgaactctgcttatatcaatcccatattccaaactaatagacaacatttgtttatcagtta |
18416476 |
T |
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| Q |
148 |
aattggccacaatttctgcatcaaattctgaaaatgcagccctg |
191 |
Q |
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| T |
18416477 |
agttggccaatgttgctgcatgaaattctgaaaatgcagtcctg |
18416520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 18986427 - 18986281
Alignment:
| Q |
65 |
gttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
164 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18986427 |
gttagcattatcaacaactcctctaacttttcttatgtcaatgctatattctgaactaatagacatcatttgcttatcaatcaaattggccacaatttct |
18986328 |
T |
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| Q |
165 |
gcatcaaattctgaaaatgcagccctgcacataaatttaaaattagt |
211 |
Q |
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| T |
18986327 |
gcatcaaattctgaaaatgcagctctgcacataaatttaaagttagt |
18986281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 23919090 - 23919236
Alignment:
| Q |
65 |
gttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
164 |
Q |
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|
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23919090 |
gttagcattatcaacaactcctctaacttttcttatgtcaatgctatattctgaactaatagacatcatttgcttatcaatcaaattggccacaatttct |
23919189 |
T |
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| Q |
165 |
gcatcaaattctgaaaatgcagccctgcacataaatttaaaattagt |
211 |
Q |
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| T |
23919190 |
gcatcaaattctgaaaatgcagctctgcacataaatttaaagttagt |
23919236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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