View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_low_28 (Length: 572)
Name: NF1498_low_28
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_28 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Original strand, 32845196 - 32845767
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32845196 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggtctattacac |
32845295 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845296 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
32845395 |
T |
|
| Q |
201 |
catacaatagtgatgaagaagattggtttccaaacctatttagtgtcatcaaagcagcttccatatctctctccccaagtttcaacctttttcctacccc |
300 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32845396 |
cataccatagcgatgaagaagattggtttccaaacctatgtagtgtcatcaaagcagcttccatatctctctcaccaagtttcaacctttttcctacccc |
32845495 |
T |
|
| Q |
301 |
tctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataaacccctctttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32845496 |
tctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataaacctctctttt |
32845595 |
T |
|
| Q |
401 |
atcatggaaacaacataccaaaacttctctgaaagtggcaatatttcagaacctaaagtggaaatatttgaaagaagtgtttcaccagctgcctgagcta |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32845596 |
atcatggaaacaacataccaaaacttctctgaaagtggcaatatttccgaacctaaagtggaaatatttgaaaggagtgtttcaccagctgcctgagcta |
32845695 |
T |
|
| Q |
501 |
cgtctttattgattgtcacctcaatttttccatctgaatcttcttcccctctacaagaaaaataagccttgt |
572 |
Q |
| |
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|||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32845696 |
cgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgt |
32845767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Original strand, 32831915 - 32832486
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32831915 |
acaagtgtaaaattatcaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggtctattacac |
32832014 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32832015 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
32832114 |
T |
|
| Q |
201 |
catacaatagtgatgaagaagattggtttccaaacctatttagtgtcatcaaagcagcttccatatctctctccccaagtttcaacctttttcctacccc |
300 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32832115 |
cataccatagcgatgaagaagattggtttccaaacctatgtagtgtcatcaaagcagcttccatatctctctcaccaagtttcaacctttttcctacccc |
32832214 |
T |
|
| Q |
301 |
tctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataaacccctctttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32832215 |
tctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataaacctctctttt |
32832314 |
T |
|
| Q |
401 |
atcatggaaacaacataccaaaacttctctgaaagtggcaatatttcagaacctaaagtggaaatatttgaaagaagtgtttcaccagctgcctgagcta |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32832315 |
atcatggaaacaacataccaaaacttctctgaaagtggcaatatttccgaacctaaagtggaaatatttgaaaggagtgtttcaccagctgcctgagcta |
32832414 |
T |
|
| Q |
501 |
cgtctttattgattgtcacctcaatttttccatctgaatcttcttcccctctacaagaaaaataagccttgt |
572 |
Q |
| |
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|||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32832415 |
cgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgt |
32832486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 17932728 - 17932157
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
17932728 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggactattacac |
17932629 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17932628 |
ttcaaaaatacactgcaacacttaaacccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
17932529 |
T |
|
| Q |
201 |
catacaatagtgatgaagaagattggtttccaaacctatttagtgtcatcaaagcagcttccatatctctctccccaagtttcaacctttttcctacccc |
300 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
17932528 |
cataccatagagatgaagaagattggtttccaaacctatgtagtgtcatcaaagcagcttccatatctctctcaccaagtttcaacctttttcctacccc |
17932429 |
T |
|
| Q |
301 |
tctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataaacccctctttt |
400 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17932428 |
tctaatcactcccctccctggacaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataaacctctctttt |
17932329 |
T |
|
| Q |
401 |
atcatggaaacaacataccaaaacttctctgaaagtggcaatatttcagaacctaaagtggaaatatttgaaagaagtgtttcaccagctgcctgagcta |
500 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| |
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| T |
17932328 |
atcatagaaacaacataccaaaacttctctgaaactggcaatatttcagaacctaaagtggaaatatttgaaaggagtatttcaccagctgcctgaacta |
17932229 |
T |
|
| Q |
501 |
cgtctttattgattgtcacctcaatttttccatctgaatcttcttcccctctacaagaaaaataagccttgt |
572 |
Q |
| |
|
|||||||||||| ||||||| ||| | ||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
17932228 |
cgtctttattgagtgtcaccccaagtattccatctgaatcttcttcccttctacaagcaaaataagccttgt |
17932157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 30 - 567
Target Start/End: Complemental strand, 46189227 - 46188684
Alignment:
| Q |
30 |
atattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacacttcaaaactacactgcaacacttagtccc |
129 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||| |||||| |||| | |||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
46189227 |
atattgggtattgatgaatgcaatcaccccatggtcccttatgagactcaccaagtattggtctattacacttcaaaacaacactgcaacacttggtccc |
46189128 |
T |
|
| Q |
130 |
acttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagttcatacaatagtgatgaagaagattggttt |
229 |
Q |
| |
|
|||||| ||||||| | |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||| |
|
|
| T |
46189127 |
acttcccattccaacttgccaaacattatcacctttcttcactttttccttggcttccaagtaagcaagttcataccacaatgatgaagaagattgattt |
46189028 |
T |
|
| Q |
230 |
ccaaacctatttagtgtcatcaaagcagcttccatatctctctccccaagtttcaacctttttcctacccctctaatcactcccctccctggagaaggca |
329 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| || ||| |||| ||||| ||||||| |||||| || |||| ||||| |||||||||| | | |||| |
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| T |
46189027 |
ccaaacctatgaagtgtcatcaaagcaggttcaatctctttctcaccaagcttcaacccttttcccacttctcttatcacacccctccctgaacatggca |
46188928 |
T |
|
| Q |
330 |
atatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataaac----ccctctttt--atcatggaaacaacataccaaaa |
423 |
Q |
| |
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| ||||||||||| ||||||||||||||||||||||| || || ||| |||| |||||| |||||||| |||| ||||| | ||||||||| |
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| T |
46188927 |
aacaaaaatgttgtataacagtcttaaaatcaggcacataaatcccttcacatttcataaacacaaacctctttttcatcacagaaactaaataccaaaa |
46188828 |
T |
|
| Q |
424 |
cttctctgaaagtggcaatatttcagaacctaaagtggaaatatttgaaagaagtgtttcaccagctgcctgagctacgtctttattgattgtcacctca |
523 |
Q |
| |
|
|||||||||| |||||||||||||||||| | | |||||||||||| ||||||||||||||||| | ||| || || | |||| ||||||| || |
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|
| T |
46188827 |
tttctctgaaactggcaatatttcagaaccaatgattgaaatatttgaacgaagtgtttcaccagctacatgaagcacatccctcttgagtgtcacccca |
46188728 |
T |
|
| Q |
524 |
atttttccatctgaatcttcttcccctctacaagaaaaataagc |
567 |
Q |
| |
|
| ||||||||||||||||||||||| | |||| || |||||||| |
|
|
| T |
46188727 |
agttttccatctgaatcttcttcccttatacaggataaataagc |
46188684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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