View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_281 (Length: 226)
Name: NF1498_low_281
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_281 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 42307481 - 42307693
Alignment:
| Q |
1 |
gcagtattgaatcatatcacaatcacaatagatgactgcttaactgactaatatttaaccatgatatactctagtataaaacctatacacaattcatata |
100 |
Q |
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| T |
42307481 |
gcagtattgaatcatatcacaatcacaatagatgactgcttaactgactaatatttaaccatgatatactctagtataaaacctatacacaattcatata |
42307580 |
T |
|
| Q |
101 |
tatgtttaacattgtaaaattaagcatatgatgcaaaaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaactta |
200 |
Q |
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| T |
42307581 |
tatgtttaacattgtaaaattatgcatatgatgcaaaaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaactta |
42307680 |
T |
|
| Q |
201 |
ccttttttagttc |
213 |
Q |
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||||||||||||| |
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| T |
42307681 |
ccttttttagttc |
42307693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 51570711 - 51570635
Alignment:
| Q |
134 |
caaaaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaacttaccttttttagttc |
213 |
Q |
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||||||| |||||||||| |||| ||| || ||||||||||||| || |||||||||||| ||||||||||||||||| |
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| T |
51570711 |
caaaaagcaattaaattaacttttccaataattctaatgtcatca-ca--gaaattagaaaagcttaccttttttagttc |
51570635 |
T |
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