View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_282 (Length: 226)
Name: NF1498_low_282
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_282 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 7822488 - 7822705
Alignment:
| Q |
1 |
atataattgtgatagagatgcacaaaataatcaaaacaacgtacacttggccaaaagttaaattttgtagagatgtggaaagaaaagaagcc----ttaa |
96 |
Q |
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| T |
7822488 |
atataattgtgatagagatgcacaaaataatcaaaacaacgtacacttggccaaaagttaaattttgtagagatgtggaaagaaaagaagccttaattaa |
7822587 |
T |
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| Q |
97 |
ttcaaacttaagcaactcaaatagattgtatcaaacagtaataacatcaatcaatatg-aaaggaaaaataaatcaagca--tgtggaaattaagcctga |
193 |
Q |
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| T |
7822588 |
ttcaaacttaagcaactcaaatagattgtatcaaacagtaataacatcaatcaatatgaaaaggaaaaataaaccaagcatgtgtggaaattaagcctga |
7822687 |
T |
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| Q |
194 |
ttgaagggattgaaaaag |
211 |
Q |
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| T |
7822688 |
tcgaagggattgaaaaag |
7822705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 177
Target Start/End: Original strand, 17830361 - 17830471
Alignment:
| Q |
67 |
gtagagatgtggaaagaaaagaagccttaattcaaacttaagcaactcaaatagattgtatcaaacagtaataacatcaatcaatatgaaaggaaaaata |
166 |
Q |
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| T |
17830361 |
gtagagatatggaaagaaaagagaccttaattcaaacttaagcaactcaaacatattgtattaggcagtaatattctcgatcaatatgaaaggaaaaata |
17830460 |
T |
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| Q |
167 |
aatcaagcatg |
177 |
Q |
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| T |
17830461 |
aaccaagcatg |
17830471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 17830199 - 17830274
Alignment:
| Q |
1 |
atataattgtgatagagatgcacaaaataatcaaaacaacgtacacttggccaaaagttaaattttgtagagatgt |
76 |
Q |
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|||||||||||||||||||||||| |||||||||||||| || |||||||||| ||||| ||||||| |||||| |
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| T |
17830199 |
atataattgtgatagagatgcacacaataatcaaaacaaaataaacttggccaatggttaatttttgtatagatgt |
17830274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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