View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_29 (Length: 571)

Name: NF1498_low_29
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_29
NF1498_low_29
[»] chr4 (1 HSPs)
chr4 (9-571)||(51978806-51979365)
[»] chr2 (1 HSPs)
chr2 (537-571)||(32323684-32323718)
[»] chr8 (2 HSPs)
chr8 (542-571)||(38238953-38238982)
chr8 (539-571)||(1245345-1245377)
[»] chr7 (1 HSPs)
chr7 (519-571)||(46392615-46392670)
[»] chr6 (1 HSPs)
chr6 (539-571)||(847829-847861)
[»] chr3 (1 HSPs)
chr3 (539-571)||(3035594-3035626)


Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 9 - 571
Target Start/End: Complemental strand, 51979365 - 51978806
Alignment:
Q  9 gacatcatcaaacctgaagattcacaaatctggtaattgggatcttttttgagagaatgcgaacatcatgctgaatgggctcataaattaacttccattt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51979365 gacatcatcaaacctgaagattcacaaatctggtaattgggatcttttttgagagaatgcgaacatcatgctgaatgggctcataaattaacttccattt 51979266  T
Q  109 ccattcaggtgtcaaaggtttaaatacaagctttgcttgacattcattgatcggagcattgtagatctgcacacacaaaattgatctcctgaatatgtag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51979265 ccattcaggtgtcaaaggtttaaatacaagctttgcttgacattcattgatcggagcattgtagatctgcacacacaaaattgatctcctgaatatgtag 51979166  T
Q  209 taatcatcatgtgaaaacaattgtctagaagaagnnnnnnnnctcacaacattaacctatttggatgtgaagacatccaaatatagaaatgcttaaattt 308  Q
    ||||||||||||||||||||||||||||||||||        |||||||||||||| ||||   |  |||||||||||||||||||||||||||||||||    
T  51979165 taatcatcatgtgaaaacaattgtctagaagaagaaaaaaaactcacaacattaacttatt---aactgaagacatccaaatatagaaatgcttaaattt 51979069  T
Q  309 catagagcatcattccttttaattaagaattctcattgaaaattcttgtatccgtagaacagacgagtttaatcacatagacaggataaaaagacaacat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51979068 catagagcatcattccttttaattaagaattctcattgaaaattcttgtatccgtagaacagatgagtttaatcacatagacaggataaaaagacaacat 51978969  T
Q  409 ctaaccataccaccgtagtgcgattagaacagaataatctcgtttatgcaccatgcatgatgaactacgaaagcagtatttactctcccagtcccttttt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51978968 ctaaccataccaccgtagtgcgattagaacagaataatctcgtttatgcaccatgcatgatgaactatgaaagcagtatttactctcccagtcccttttt 51978869  T
Q  509 gactgtcaactttgtaaaagaattttgttctttatttgtcattttcaaagttcaatgcaacat 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51978868 gactgtcaactttgtaaaagaattttgttctttatttgtcattttcaaagttcaatgcaacat 51978806  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Original strand, 32323684 - 32323718
Alignment:
Q  537 tctttatttgtcattttcaaagttcaatgcaacat 571  Q
    |||||||||||| ||||||||||||||||||||||    
T  32323684 tctttatttgtcgttttcaaagttcaatgcaacat 32323718  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 571
Target Start/End: Original strand, 38238953 - 38238982
Alignment:
Q  542 atttgtcattttcaaagttcaatgcaacat 571  Q
    ||||||||||||||||||||||||||||||    
T  38238953 atttgtcattttcaaagttcaatgcaacat 38238982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 571
Target Start/End: Original strand, 1245345 - 1245377
Alignment:
Q  539 tttatttgtcattttcaaagttcaatgcaacat 571  Q
    |||| ||||||||||||||||||||||||||||    
T  1245345 tttaattgtcattttcaaagttcaatgcaacat 1245377  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 571
Target Start/End: Complemental strand, 46392670 - 46392615
Alignment:
Q  519 tttgtaaaagaattttgttc---tttatttgtcattttcaaagttcaatgcaacat 571  Q
    |||||| || ||||||||||   |||||||||| ||||||||||||||||||||||    
T  46392670 tttgtagaacaattttgttcctatttatttgtcgttttcaaagttcaatgcaacat 46392615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 571
Target Start/End: Original strand, 847829 - 847861
Alignment:
Q  539 tttatttgtcattttcaaagttcaatgcaacat 571  Q
    |||| ||||||||||||||||||||||||||||    
T  847829 tttacttgtcattttcaaagttcaatgcaacat 847861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 571
Target Start/End: Complemental strand, 3035626 - 3035594
Alignment:
Q  539 tttatttgtcattttcaaagttcaatgcaacat 571  Q
    |||||||||| ||||||||||||||||||||||    
T  3035626 tttatttgtcgttttcaaagttcaatgcaacat 3035594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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