View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_292 (Length: 218)
Name: NF1498_low_292
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_292 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 51976593 - 51976408
Alignment:
| Q |
15 |
cagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaag |
114 |
Q |
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| T |
51976593 |
cagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaag |
51976494 |
T |
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| Q |
115 |
agtcacaactattggtgatatgagacatgttcacgcatcaagagacgtgttttttgagtgagttcgtaaatgggttataacatttc |
200 |
Q |
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| T |
51976493 |
agtcacaactattggtgatatgagacatgttcacgcatcaagagacgtgttttttgagtgagttcgtaaatgggttataacatttc |
51976408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 51972156 - 51972072
Alignment:
| Q |
29 |
aagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaa |
113 |
Q |
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| T |
51972156 |
aagaaagtggaggatccatggaaggaaacatgaaacaatgttatgtttgatttgggaaacttggtaatgtttaaatagtagtgaa |
51972072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 17726944 - 17727032
Alignment:
| Q |
25 |
gtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaa |
113 |
Q |
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| T |
17726944 |
gtgaaagaaagtggaggatccatggaaggaaaaatgaaacaatgctatgttcaatttggaaaacttgataacgtttaaatagtaatgaa |
17727032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 17712060 - 17712143
Alignment:
| Q |
25 |
gtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagta |
108 |
Q |
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| T |
17712060 |
gtgaaagaaagtggaggatccatggaaggaaatatgaaataatgttatgttcaatttgagaaactgtgtaatgtttaaatagta |
17712143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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