View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_low_293 (Length: 218)
Name: NF1498_low_293
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_293 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 19795404 - 19795219
Alignment:
| Q |
15 |
tgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcatgtgattaagggggataatctcaagtccaagacacagtttgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19795404 |
tgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcatgtgattaagggggataatctcaagtccaagacacagtttgt |
19795305 |
T |
|
| Q |
115 |
gaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattggatgtagctgttaatgggaatctcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19795304 |
gaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattggatgtagctgttaatgggaatctcaaag |
19795219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 19786197 - 19786366
Alignment:
| Q |
29 |
tggaaagggaaggttattactttcagcagggagcctcagcttcatgtgattaagggggataatctcaagtccaagacacagtttgtgaggaacatggatt |
128 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
19786197 |
tggaaagggaaagttattactttcagcgaggagcctcagcttcatgtaattaagggggataatctcaagtccaagacacagtttgtgagggatatggatt |
19786296 |
T |
|
| Q |
129 |
gggggatgaacactgattttcagaaggtgtttgatcgcatattggatgtagctgttaatgggaatctcaa |
198 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
19786297 |
gggggatgaacactgatttccagaaggtgtttgatcgcatattggaggtggctgttaatgggaatctcaa |
19786366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 47712298 - 47712120
Alignment:
| Q |
20 |
gaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcatgtgattaagggggataatctcaagtccaagacacagtttgtgagga |
119 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||| | |
|
|
| T |
47712298 |
gaggaaccttggaaagggaaggtgattactttcagtgctgagcctcagcttcatgtgattcagggggatgatctgaagtccaagacagagtttgtgatgg |
47712199 |
T |
|
| Q |
120 |
acatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattggatgtagctgttaatgggaatctcaa |
198 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
47712198 |
agatggattgggggatgaacactgatttccagaaggtatttgatcgcatattggatgtcgctgtaaatgggaatctcaa |
47712120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 15834707 - 15834531
Alignment:
| Q |
19 |
cgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcatgtgattaagggggataatctcaagtccaagacacagtttgtgagg |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||| |||| ||||||||| || ||||||||| |
|
|
| T |
15834707 |
cgaggaaccatggaaagggaaggtgattagtttcagtgctgagcctgagcttcatgtgattaagggggatgatctgaagtccaaggcaaggtttgtgaga |
15834608 |
T |
|
| Q |
119 |
aacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattggatgtagctgttaatgggaatct |
195 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
15834607 |
tacatggattgggggttcaacactgatttccagaaggtgtttgatcgaatattggatgtggctgtcaatgggaatct |
15834531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University