View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_low_295 (Length: 217)
Name: NF1498_low_295
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_295 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 5067246 - 5067448
Alignment:
| Q |
1 |
atcaagaaaatatgaagaaaatgaaaccaatggaatagtctaaaa-accaagtacataaaaaccactccactaacaagaaacatgaacataggaacatta |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5067246 |
atcaagaaaatatgaagaaaatgaaaccaatggaatagtctaaaaaaccaagtacataaaaaccactccactaacaagaaacatgaacataggaacatta |
5067345 |
T |
|
| Q |
100 |
gactttatagaacacatgcaccaaagtaaccaatcaaatgatgatgatggnnnnnnnnnnnnnnnnncatgtgaagttgtttatgatttttaccttgacc |
199 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5067346 |
gac-ttatagaacacatgcaccaaagtaaccaatcaaatgatgatgatggaaaaacaaaacaaaaaacatgtgaagttgtttatgatttttaccttgacc |
5067444 |
T |
|
| Q |
200 |
tttg |
203 |
Q |
| |
|
|||| |
|
|
| T |
5067445 |
tttg |
5067448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University