View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_304 (Length: 212)
Name: NF1498_low_304
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_304 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 1042790 - 1042973
Alignment:
| Q |
15 |
atcaagttaaggtaacaactaaaaactttttacttcaatattttaaggtttcttttggcgtatgaatgcatggaggtacttgaaatttttattttgttat |
114 |
Q |
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| T |
1042790 |
atcaagttaaggtaacaactaaaaactttttacttcaatattttaaggtttcttttggcgtctgaatgcatggaggtacttgaaatttttattttgttat |
1042889 |
T |
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| Q |
115 |
ttgaagaacttggtgctattttcagatgacttgtcaaatatatattcagagttaataaggcacaaactagaagaggtatctttt |
198 |
Q |
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| T |
1042890 |
ttgaagaacttggtgctattttcagatgacttgtcaaatatatattcagagttaataaggcacaaactagaagaggtatctttt |
1042973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 1080491 - 1080670
Alignment:
| Q |
15 |
atcaagttaaggtaacaactaaaaactttttacttcaatattttaaggtttcttttggcgtatgaatgcatggaggtacttgaaatttttattttgttat |
114 |
Q |
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| T |
1080491 |
atcaagttaaggtaacaactcaaaaatttttacttcaatattttaaggtttcctttggattctgaatgcatggaagtacttgaaatttttatttttctat |
1080590 |
T |
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| Q |
115 |
ttgaagaacttggtgctattttcagatgacttgtcaaatatatattcagagttaataaggcacaaactagaagaggtatc |
194 |
Q |
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| T |
1080591 |
ttgaagaacttggtgctattttcagatgacttgtcaaatatatactcaaagttaaaaaggcacaaactcaaagaggtatc |
1080670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 1066920 - 1067003
Alignment:
| Q |
15 |
atcaagttaaggtaacaactaaaaactttttacttcaatattttaaggtttcttttggcgtatgaatgcatggaggtacttgaa |
98 |
Q |
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| T |
1066920 |
atcaagttaatgtaacaactattttttttttacttgaatatttttaagtttcctttggcttctgaatgcatggaggtacttgaa |
1067003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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