View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_305 (Length: 212)
Name: NF1498_low_305
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_305 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 3634640 - 3634561
Alignment:
| Q |
133 |
cctggaaacccatctagataaaaagaggccaatgtataaataagtgatgagaaaagaagatgaagaatgaaattttggtt |
212 |
Q |
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| T |
3634640 |
cctggaaccccatctagataaaaagtggccaatgtataaataagtgatgagaaaagaagatgaagaatgaaattttggtt |
3634561 |
T |
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Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 3634766 - 3634709
Alignment:
| Q |
7 |
gatttcacacgacaaaaacaacaatttcaattcacactttttgatacaaggtgatgat |
64 |
Q |
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| T |
3634766 |
gatttcacacgacaaaaacaacaatttcaattcacactttttgatacaaggtgatgat |
3634709 |
T |
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