View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_311 (Length: 207)

Name: NF1498_low_311
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_311
NF1498_low_311
[»] chr1 (14 HSPs)
chr1 (7-200)||(28674764-28674956)
chr1 (97-159)||(2784561-2784623)
chr1 (68-138)||(5898229-5898299)
chr1 (68-156)||(18190071-18190159)
chr1 (96-152)||(23636040-23636096)
chr1 (109-156)||(609462-609509)
chr1 (106-172)||(6427342-6427408)
chr1 (100-189)||(2896116-2896205)
chr1 (107-156)||(12993202-12993251)
chr1 (95-152)||(29163371-29163428)
chr1 (68-157)||(40258896-40258985)
chr1 (68-125)||(43492457-43492514)
chr1 (100-156)||(19637776-19637832)
chr1 (68-156)||(38078624-38078712)
[»] chr6 (13 HSPs)
chr6 (61-136)||(26314590-26314665)
chr6 (69-156)||(9658887-9658974)
chr6 (106-157)||(14721248-14721299)
chr6 (68-153)||(13360336-13360420)
chr6 (107-156)||(15443703-15443752)
chr6 (65-156)||(7977790-7977881)
chr6 (106-156)||(9617442-9617492)
chr6 (106-156)||(24115848-24115898)
chr6 (68-138)||(28152124-28152194)
chr6 (106-155)||(9629392-9629441)
chr6 (68-136)||(33419201-33419270)
chr6 (100-152)||(7377991-7378043)
chr6 (110-174)||(30866149-30866213)
[»] scaffold0022 (1 HSPs)
scaffold0022 (68-157)||(90850-90939)
[»] chr3 (8 HSPs)
chr3 (106-158)||(7614416-7614468)
chr3 (77-156)||(45451561-45451640)
chr3 (69-159)||(21419420-21419509)
chr3 (106-174)||(47362552-47362620)
chr3 (111-153)||(27097065-27097107)
chr3 (99-156)||(20691327-20691384)
chr3 (89-156)||(11251986-11252051)
chr3 (68-156)||(55401083-55401171)
[»] chr7 (11 HSPs)
chr7 (77-156)||(22484033-22484112)
chr7 (77-154)||(3554478-3554555)
chr7 (68-156)||(598216-598304)
chr7 (68-163)||(21880153-21880248)
chr7 (101-156)||(24146824-24146879)
chr7 (68-115)||(33994261-33994308)
chr7 (109-159)||(27732243-27732293)
chr7 (107-156)||(23849460-23849509)
chr7 (106-156)||(19206058-19206108)
chr7 (100-156)||(3721101-3721157)
chr7 (84-156)||(4909159-4909231)
[»] chr5 (5 HSPs)
chr5 (106-156)||(22423813-22423863)
chr5 (104-156)||(23287348-23287400)
chr5 (106-156)||(17925173-17925223)
chr5 (106-156)||(18592081-18592131)
chr5 (109-159)||(30098331-30098381)
[»] chr4 (6 HSPs)
chr4 (68-156)||(8423681-8423769)
chr4 (84-155)||(9996849-9996920)
chr4 (99-163)||(11135288-11135352)
chr4 (68-156)||(21345496-21345584)
chr4 (100-156)||(33950144-33950200)
chr4 (67-115)||(34306766-34306814)
[»] chr8 (14 HSPs)
chr8 (89-156)||(14134707-14134774)
chr8 (99-156)||(12985400-12985457)
chr8 (72-156)||(20679362-20679446)
chr8 (106-157)||(4786339-4786390)
chr8 (101-156)||(12606825-12606880)
chr8 (112-158)||(8798838-8798884)
chr8 (107-156)||(7658471-7658520)
chr8 (83-156)||(26434188-26434261)
chr8 (118-163)||(38278188-38278233)
chr8 (119-155)||(9382981-9383017)
chr8 (107-195)||(12570736-12570824)
chr8 (108-156)||(31236580-31236628)
chr8 (90-158)||(33405369-33405437)
chr8 (109-157)||(37380949-37380997)
[»] chr2 (9 HSPs)
chr2 (106-156)||(31026703-31026753)
chr2 (68-116)||(27084317-27084365)
chr2 (105-156)||(34331395-34331446)
chr2 (111-150)||(35973949-35973988)
chr2 (106-159)||(17077013-17077065)
chr2 (118-171)||(35447900-35447953)
chr2 (114-159)||(41942110-41942155)
chr2 (68-156)||(18840976-18841064)
chr2 (124-172)||(19959807-19959855)
[»] scaffold0110 (1 HSPs)
scaffold0110 (107-159)||(28855-28907)
[»] scaffold0050 (1 HSPs)
scaffold0050 (68-158)||(70284-70374)
[»] scaffold0053 (1 HSPs)
scaffold0053 (67-115)||(8847-8895)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 28674956 - 28674764
Alignment:
Q  7 attataattatagttatgaactacttataatgagttgaatatagggcacatacgctttttagattaggcctgtctcggtgttggacaagtgttgtgtctg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||| |||||||    
T  28674956 attataattatagttatgaactacttataatgagttgaatatagggcacatacactttt-agattaggcgtgtctcagtgttggacaagtgtcgtgtctg 28674858  T
Q  107 acaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtcggcgtctatgttgtgtctaatgtctgtg 200  Q
    ||||| ||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  28674857 acaccaacatatataattatactgaattatgtaattttctcaaattattaacggtgttagcgtgtcggcgtctatgttgtgtctagtgtctgtg 28674764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 2784623 - 2784561
Alignment:
Q  97 gttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacg 159  Q
    ||||||||||||||||||| ||||||||||| | ||||||||  |||||||||||| ||||||    
T  2784623 gttgtgtctgacaccgacacatataattatactcaattatgtgattttcttaaatttttaacg 2784561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 5898229 - 5898299
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgt 138  Q
    |||||| | |||| |||||||||||| |||| |||||||||||||||  ||||||||| | ||||||||||    
T  5898229 gattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgt 5898299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 18190071 - 18190159
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||  |||| |||||| ||||| ||||||||||||||| |||||  | |||||| | ||||||||||| |||| | |||||||||    
T  18190071 gattaggtgtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaattatgtaattttttcaaattatta 18190159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 23636040 - 23636096
Alignment:
Q  96 tgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaatt 152  Q
    |||||||||||||||||||| ||| ||||| | ||||||||||| |||||| |||||    
T  23636040 tgttgtgtctgacaccgacacatacaattacactgaattatgtaattttctcaaatt 23636096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 609462 - 609509
Alignment:
Q  109 accgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||||||| ||||| |||||||||||| |||||| |||||||||    
T  609462 accgacatatatgattatgttgaattatgtaattttctcaaattatta 609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 6427408 - 6427342
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtc 172  Q
    |||||| ||| ||||||||| ||||||||||||  |||||| ||||||||| || |||| |||||||    
T  6427408 gacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtc 6427342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 2896116 - 2896205
Alignment:
Q  100 gtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtcggcgtctatgttgtgtc 189  Q
    ||||||||||||||||||||||  || | ||||||||||  |||||| ||||||||| || |||  ||||||| | |||  |||||||||    
T  2896116 gtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtc 2896205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 12993251 - 12993202
Alignment:
Q  107 acaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||||||||||||||| ||||||||| ||| ||| | ||||||||||    
T  12993251 acaccgacatatataattacattgaattacgtaatttacgtaaattatta 12993202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 29163371 - 29163428
Alignment:
Q  95 gtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaatt 152  Q
    |||| ||||| |||||||||| ||||||||| ||||||||||||  ||||| ||||||    
T  29163371 gtgtcgtgtccgacaccgacacatataattaaattgaattatgtgattttcctaaatt 29163428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 40258896 - 40258985
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaa 157  Q
    |||||||| ||||  ||||| ||||| |||| ||||||||||||||||  | |||||| | ||||||||||  |||| | ||||||||||    
T  40258896 gattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgattttttcaaattattaa 40258985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 43492457 - 43492514
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataatta 125  Q
    |||||||| |||  |||||| ||||| ||||||||||||||||||||| | |||||||    
T  43492457 gattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgacacacataatta 43492514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 19637832 - 19637776
Alignment:
Q  100 gtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||| |||||||||| |||| |||| ||||||| ||||  ||||||||||||||||    
T  19637832 gtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattatta 19637776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 38078624 - 38078712
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||| ||||  ||||||| ||| |||| ||||| ||||||||||  | |||||| ||||||||||||  |||| | |||||||||    
T  38078624 gattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtgattttttcaaattatta 38078712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 26314590 - 26314665
Alignment:
Q  61 ctttttagattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattat 136  Q
    |||||| ||||| || ||| |||||||||||||||||| || |||||| |||||||||||||||| ||||||||||    
T  26314590 ctttttcgattaagcttgtttcggtgttggacaagtgtcgtatctgaccccgacatatataattacattgaattat 26314665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 9658974 - 9658887
Alignment:
Q  69 attaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||| |||  ||||||  |||| |||| |||||| ||||||||| ||||||||| | ||||||||||  ||||||||||||||||    
T  9658974 attaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattatta 9658887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 14721299 - 14721248
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattattaa 157  Q
    |||||| ||| ||||||||||| ||||||||||| |||||||||||||||||    
T  14721299 gacaccaacacatataattatagtgaattatgtaattttcttaaattattaa 14721248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 13360336 - 13360420
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaatta 153  Q
    |||||||| |||||| |||| |||||  |||||||||||||||||| | ||||||||| | ||||||||||  |||||| ||||||    
T  13360336 gattaggcgtgtctcagtgtcggacat-tgttgtgtctgacaccgaaacatataattacactgaattatgtgattttctcaaatta 13360420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 15443752 - 15443703
Alignment:
Q  107 acaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||| ||||||||||||||||||||||||||  |||||| |||||||||    
T  15443752 acaccaacatatataattatattgaattatgttattttctcaaattatta 15443703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 7977790 - 7977881
Alignment:
Q  65 ttagattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||||||| ||| ||| ||| |||||  ||||||||| ||||||||||  | |||||| | ||||||||||| |||| | |||||||||    
T  7977790 ttagattaggcgtgtttcgttgtcggacatatgttgtgtccgacaccgacacttgtaattacactgaattatgtaattttttcaaattatta 7977881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 9617492 - 9617442
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||||| ||||||||| ||||||||||||  |||||| |||||||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 24115848 - 24115898
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||| ||||||||||||||||||||||||||  |||| | |||||||||    
T  24115848 gacaccaacatatataattatattgaattatgtgattttttgaaattatta 24115898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 28152194 - 28152124
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgt 138  Q
    ||||||||||||| |||||| ||||| |||| ||||| ||||||||||  | |||||| | ||||||||||    
T  28152194 gattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgt 28152124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 9629441 - 9629392
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattatt 155  Q
    |||||||||| ||||||||| ||||||||||||  |||||| ||||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 33419270 - 33419201
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttg-tgtctgacaccgacatatataattatattgaattat 136  Q
    |||||||| ||||  ||||||||||| | |||| ||||||||||| ||| ||||||||| ||||||||||    
T  33419270 gattaggcatgtcctggtgttggacacgcgttggtgtctgacaccaacacatataattacattgaattat 33419201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 7378043 - 7377991
Alignment:
Q  100 gtgtctgacaccgacatatataattatattgaattatgtagttttcttaaatt 152  Q
    ||||| |||||||||| ||||||||| ||||||||||||  |||||| |||||    
T  7378043 gtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatt 7377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 30866149 - 30866213
Alignment:
Q  110 ccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtcgg 174  Q
    |||||| ||||||||| ||||||||||||  |||||| ||||||||| || |||| | |||||||    
T  30866149 ccgacacatataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcgg 30866213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 90939 - 90850
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaa 157  Q
    |||||||| ||| | ||||| ||||| ||||||||||||||| ||||||||||||||| | |||||||| |  |||||| ||||||||||    
T  90939 gattaggcgtgttttggtgtcggacacgtgttgtgtctgacatcgacatatataattacactgaattatatgattttctcaaattattaa 90850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 7614416 - 7614468
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattattaac 158  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  7614416 gacaccgacatatataattatactgaattatgtgattttcttaaattattaac 7614468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 45451640 - 45451561
Alignment:
Q  77 tgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||||||| ||||| |||| ||||| |||||||||| |||| |||||| |||| |||||  |||||| |||||||||    
T  45451640 tgtctcggtgtcggacatgtgtcgtgtccgacaccgacacatattattatactgaagtatgtgattttctcaaattatta 45451561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 21419420 - 21419509
Alignment:
Q  69 attaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacg 159  Q
    ||||||| ||| ||||||| ||||| || | ||||  |||||| ||||||||||||| |||||||||| |  |||||||||||||||||||    
T  21419420 attaggcgtgtttcggtgt-ggacatgtatggtgttcgacaccaacatatataattacattgaattatattattttcttaaattattaacg 21419509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 47362620 - 47362552
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtcgg 174  Q
    ||||| ||||| |||||||| ||| ||||||||| ||||||||||||||||  ||||||  ||||||||    
T  47362620 gacactgacatgtataattacattcaattatgtaattttcttaaattattactgatgttgacgtgtcgg 47362552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 27097065 - 27097107
Alignment:
Q  111 cgacatatataattatattgaattatgtagttttcttaaatta 153  Q
    ||||||||||||||| ||||||||||||| |||||| ||||||    
T  27097065 cgacatatataattaaattgaattatgtaattttctcaaatta 27097107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 20691384 - 20691327
Alignment:
Q  99 tgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||||||||||||| |||| |||| | ||||||||||  |||||| |||||||||    
T  20691384 tgtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattatta 20691327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 11252051 - 11251986
Alignment:
Q  89 ggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||| ||||||||||||||||||||  | ||||||| | ||||||||||  |||||| |||||||||    
T  11252051 ggacacgtgttgtgtctgacaccgac--acataattacactgaattatgtgattttctcaaattatta 11251986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 55401171 - 55401083
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||| ||||||||||| ||||| |||| ||||| ||||||||||  | |||||| | | ||||||||  |||| | |||||||||    
T  55401171 gattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattatta 55401083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 22484112 - 22484033
Alignment:
Q  77 tgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||| ||| ||||| ||||  ||||||||||||||| ||||||||||| ||||||||| | |||||| |||||||||    
T  22484112 tgtctcgatgtcggacatgtgtcatgtctgacaccgacacatataattatactgaattatgcaattttctaaaattatta 22484033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 3554478 - 3554555
Alignment:
Q  77 tgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattat 154  Q
    |||||| ||||| || | |||| ||||| ||||||||||| |||||||| ||| ||||||||| ||||||||||||||    
T  3554478 tgtctcagtgttagatatgtgtcgtgtccgacaccgacatctataattacattaaattatgtaattttcttaaattat 3554555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 598304 - 598216
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||| |||| |||||| ||||| |||| ||||||||||||||||  || ||||| ||| ||||| ||  ||||||||||||||||    
T  598304 gattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaattacgtgattttcttaaattatta 598216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 21880248 - 21880153
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgt 163  Q
    |||||||| ||||  ||||| ||||| |||| ||||| ||||||||||  | |||||| | ||||||||||| |||||| ||||||||| ||||||    
T  21880248 gattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagcgatgt 21880153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 24146879 - 24146824
Alignment:
Q  101 tgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||| |||||||||| ||||||||||||||||||||||  |||||| |||||||||    
T  24146879 tgtcagacaccgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 33994308 - 33994261
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgaca 115  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||||||    
T  33994308 gattaggcgtgtctcggtgttggacatgtgtcgtgtctgacaccgaca 33994261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 27732243 - 27732293
Alignment:
Q  109 accgacatatataattatattgaattatgtagttttcttaaattattaacg 159  Q
    ||||||| ||||||||| | ||||||||||| |||||||||||||||||||    
T  27732243 accgacacatataattacactgaattatgtaattttcttaaattattaacg 27732293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 23849460 - 23849509
Alignment:
Q  107 acaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||||| ||||||||||| ||||||||||  ||||||||||||||||    
T  23849460 acaccgacacatataattatactgaattatgtgtttttcttaaattatta 23849509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 19206108 - 19206058
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||||| ||||||||||| ||||||||||  |||||| |||||||||    
T  19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattatta 19206058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 3721157 - 3721101
Alignment:
Q  100 gtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||| |||||||||| ||||||||||| | ||||||||  |||||| |||||||||    
T  3721157 gtgtccgacaccgacacatataattatactaaattatgtgattttctcaaattatta 3721101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 4909231 - 4909159
Alignment:
Q  84 gtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||| | || ||||||| ||||| |||| |||| |||| | ||||||||||| |||||| |||||||||    
T  4909231 gtgttggatatgtattgtgtccgacactgacacatatgattacaatgaattatgtaattttctcaaattatta 4909159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 22423813 - 22423863
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  22423813 gacaccgacatatataattatattgaattatgtgattttctcaaattatta 22423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 23287348 - 23287400
Alignment:
Q  104 ctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||| |||| ||||||||||||||||||||||  ||||| ||||||||||    
T  23287348 ctgacactgacacatataattatattgaattatgtcattttcctaaattatta 23287400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 17925173 - 17925223
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||||| |||| |||| ||||||||||||  ||||||||||||||||    
T  17925173 gacaccgacacatattattacattgaattatgtgattttcttaaattatta 17925223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 18592131 - 18592081
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||| || ||||||||| ||||||||||||| |||||||||| |||||    
T  18592131 gacaccggcacatataattacattgaattatgtaattttcttaaaatatta 18592081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 30098381 - 30098331
Alignment:
Q  109 accgacatatataattatattgaattatgtagttttcttaaattattaacg 159  Q
    |||||||| |||||||| ||||||||||||  |||||| ||||||||||||    
T  30098381 accgacatctataattacattgaattatgtgattttctcaaattattaacg 30098331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 8423681 - 8423769
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||| |||| |||||| |||||  ||| ||||| ||||||||||| |||||||| | ||||||||||  |||||| |||||||||    
T  8423681 gattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatgtgattttctcaaattatta 8423769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 9996920 - 9996849
Alignment:
Q  84 gtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatt 155  Q
    |||| ||||| ||||| ||||||||||||| | ||||||||||| ||||||||||  |||||| ||||||||    
T  9996920 gtgtcggacacgtgttatgtctgacaccgagacatataattatactgaattatgtgattttctcaaattatt 9996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 11135288 - 11135352
Alignment:
Q  99 tgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgt 163  Q
    |||||||||||  |||| || |||||||||||||||||||| |||||| ||| ||||| ||||||    
T  11135288 tgtgtctgacagtgacacatgtaattatattgaattatgtaattttctcaaactattagcgatgt 11135352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 21345496 - 21345584
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||| |||  |||||||||| | || | |||||||||||||||||| || |||| ||||| ||||||  |||| | |||||||||    
T  21345496 gattaggcatgtaccggtgttggatatgtatcgtgtctgacaccgacataaatgattacattgagttatgttattttttcaaattatta 21345584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 33950200 - 33950144
Alignment:
Q  100 gtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||||||||||| |||| |||| ||| ||||||||  |||||| |||||||||    
T  33950200 gtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 34306766 - 34306814
Alignment:
Q  67 agattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgaca 115  Q
    ||||||||| ||||||||||| ||||| |||| ||||| ||||||||||    
T  34306766 agattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgaca 34306814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 14134774 - 14134707
Alignment:
Q  89 ggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||| |||| |||| ||||||||||||||||||||| | ||||||||||  |||||| |||||||||    
T  14134774 ggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtgattttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 12985457 - 12985400
Alignment:
Q  99 tgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||| ||||||||||||||| |||| ||||||||||||  |||||| |||||||||    
T  12985457 tgtgtccgacaccgacatatatgattacattgaattatgtgattttctcaaattatta 12985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 20679362 - 20679446
Alignment:
Q  72 aggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||| |||| |||||| ||||| |||||| ||||||||||||||  |||||||| | |||| |||||  |||||| |||||||||    
T  20679362 aggcgtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaactatgtgattttctcaaattatta 20679446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 4786339 - 4786390
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattattaa 157  Q
    |||||||||| ||||||||| | ||||||||||  |||||||||||||||||    
T  4786339 gacaccgacacatataattacactgaattatgtgattttcttaaattattaa 4786390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 12606825 - 12606880
Alignment:
Q  101 tgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||||||||||| ||||||||| |||||||||| |  |||||| |||||||||    
T  12606825 tgtctgacaccgacacatataattacattgaattatatgattttctcaaattatta 12606880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 8798838 - 8798884
Alignment:
Q  112 gacatatataattatattgaattatgtagttttcttaaattattaac 158  Q
    |||| ||||||||||||||||||||||  |||||| |||||||||||    
T  8798838 gacacatataattatattgaattatgttattttctcaaattattaac 8798884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 7658520 - 7658471
Alignment:
Q  107 acaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||||| ||||||||| | ||||||||||| |||||| |||||||||    
T  7658520 acaccgacaaatataattacactgaattatgtaattttctcaaattatta 7658471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 26434261 - 26434188
Alignment:
Q  83 ggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||||||| || |||||||  |||||||||  | |||||||||||||||||||  |||||| ||| |||||    
T  26434261 ggtgttggacacgtattgtgtccaacaccgacacttttaattatattgaattatgtgattttctcaaactatta 26434188  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 38278188 - 38278233
Alignment:
Q  118 tataattatattgaattatgtagttttcttaaattattaacgatgt 163  Q
    |||||||||||| ||||||||  |||||||||||||||| ||||||    
T  38278188 tataattatattaaattatgtgattttcttaaattattagcgatgt 38278233  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 9383017 - 9382981
Alignment:
Q  119 ataattatattgaattatgtagttttcttaaattatt 155  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  9383017 ataattacattgaattatgtagttttctcaaattatt 9382981  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 12570736 - 12570824
Alignment:
Q  107 acaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtcggcgtctatgttgtgtctaatgt 195  Q
    ||||| ||||||||||||| | | |||||||   |||||||||||||||| || ||| | |||||||| |||||| | ||||| |||||    
T  12570736 acaccaacatatataattacacttaattatgcgtttttcttaaattattagcggtgtcaacgtgtcggtgtctatatcgtgtccaatgt 12570824  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  108 caccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||| ||||||||| ||||||||||||  |||||| |||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 33405369 - 33405437
Alignment:
Q  90 gacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaac 158  Q
    |||| |||| ||||| |||||||||| ||||||||| | | ||||||||  |||||| |||||||||||    
T  33405369 gacatgtgtcgtgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattattaac 33405437  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 37380997 - 37380949
Alignment:
Q  109 accgacatatataattatattgaattatgtagttttcttaaattattaa 157  Q
    ||||||| ||||||||||||||||||||||  || | ||||||||||||    
T  37380997 accgacaaatataattatattgaattatgtgattatgttaaattattaa 37380949  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 31026753 - 31026703
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||||||||    
T  31026753 gacaccgacatatatgattacattgaattatgtcattttcttaaattatta 31026703  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 27084365 - 27084317
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacat 116  Q
    |||||||| ||||||||||||||||| |||| ||||| |||||||||||    
T  27084365 gattaggcgtgtctcggtgttggacacgtgtcgtgtccgacaccgacat 27084317  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 34331446 - 34331395
Alignment:
Q  105 tgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    ||||| ||| ||||||||||||||| |||||| || ||||||||||||||||    
T  34331446 tgacatcgaaatatataattatatttaattatataattttcttaaattatta 34331395  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 35973949 - 35973988
Alignment:
Q  111 cgacatatataattatattgaattatgtagttttcttaaa 150  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  35973949 cgacatatataattatattgaattatgttattttcttaaa 35973988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 17077013 - 17077065
Alignment:
Q  106 gacaccgacatatataattatattgaattatgtagttttcttaaattattaacg 159  Q
    |||||| |||||||||||||||| ||||||| || |||| ||||||||||||||    
T  17077013 gacaccaacatatataattatatcgaattatataatttt-ttaaattattaacg 17077065  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 35447900 - 35447953
Alignment:
Q  118 tataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgt 171  Q
    |||| ||||| ||||||||||| ||||||| |||||||| |||||| |||||||    
T  35447900 tatagttatactgaattatgtaattttctttaattattagcgatgtcagcgtgt 35447953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 41942155 - 41942110
Alignment:
Q  114 catatataattatattgaattatgtagttttcttaaattattaacg 159  Q
    |||||||||||||| ||||||||||| |||||| ||||| ||||||    
T  41942155 catatataattatactgaattatgtaattttctcaaatttttaacg 41942110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 18840976 - 18841064
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 156  Q
    |||||||  |||| |||||| ||||| |||| ||||||||||||||||  | |||||| | | ||||||||| |||| | |||||||||    
T  18840976 gattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacacttaattatgtaattttttcaaattatta 18841064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 19959855 - 19959807
Alignment:
Q  124 tatattgaattatgtagttttcttaaattattaacgatgttagcgtgtc 172  Q
    |||||||||||||||  |||| | |||||||||||||||| ||||||||    
T  19959855 tatattgaattatgtgattttgtcaaattattaacgatgtcagcgtgtc 19959807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 28907 - 28855
Alignment:
Q  107 acaccgacatatataattatattgaattatgtagttttcttaaattattaacg 159  Q
    ||||||||| ||||||||| |||||||||||   |||||||||||||||||||    
T  28907 acaccgacacatataattacattgaattatgcgattttcttaaattattaacg 28855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 70374 - 70284
Alignment:
Q  68 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaac 158  Q
    |||||||| ||||  ||||| ||||| |||| ||||| ||||||||||  |||||||| | ||||||||||  |||| | |||||||||||    
T  70374 gattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgttattttttcaaattattaac 70284  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 8895 - 8847
Alignment:
Q  67 agattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgaca 115  Q
    ||||||||| ||||||||||| ||||| |||| ||||| ||||||||||    
T  8895 agattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgaca 8847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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