View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_316 (Length: 202)
Name: NF1498_low_316
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_316 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 14051931 - 14052101
Alignment:
| Q |
19 |
gctatggggtacctggcaccagaatacacaacaaccggtcgtttcaccgaaaagagtgacgtgtacgctttcggggtgatcgttttccagattctcactg |
118 |
Q |
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| T |
14051931 |
gctatggggtacctggcaccagaatacacaacaaccggtcgtttcaccgaaaagagtgatgtgtacgctttcgggatgattgttttccagattctcactg |
14052030 |
T |
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| Q |
119 |
gaaaacacaatatcactcaattaagtcgtcaatgtgtagaaaccggtagtttgaaagatattattgatgag |
189 |
Q |
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| T |
14052031 |
gaaaacacgatatcactcaattaagtcgtcaatgtgtagaaactggtactttgaaagatattattgatgag |
14052101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 14361959 - 14362129
Alignment:
| Q |
19 |
gctatggggtacctggcaccagaatacacaacaaccggtcgtttcaccgaaaagagtgacgtgtacgctttcggggtgatcgttttccagattctcactg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |
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| T |
14361959 |
gctatggggtacctggcaccagaatacacaacaaccggtcgtttcaccgaaaagagtgatgtgtacgctttcgggatgattgttttccagattctcactg |
14362058 |
T |
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| Q |
119 |
gaaaacacaatatcactcaattaagtcgtcaatgtgtagaaaccggtagtttgaaagatattattgatgag |
189 |
Q |
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| T |
14362059 |
gaaaacacgatatcactcaattaagtcgtcaatgtgtagaaactggtactttgaaagatattattgatgag |
14362129 |
T |
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