View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_32 (Length: 567)
Name: NF1498_low_32
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 16 - 547
Target Start/End: Original strand, 8072676 - 8073207
Alignment:
| Q |
16 |
ataatactattaatcgagctgatttattggaaaaagaactcttggcgaccaagaaggtattcaatatgttagatcagcatatttggttctaaagaaaaca |
115 |
Q |
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| T |
8072676 |
ataatactattaatcgagctgatttattggaaaaagaactcttggcgaccaagaaggtattcaatatgttagatcagcatatttggttctaaagaaaaca |
8072775 |
T |
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| Q |
116 |
aataaataaaatgcacaccagaacacaaatgattgatcacatagttcgactaattgtgcctacgtttccgacagaaaagtggttgatgtagnnnnnnnat |
215 |
Q |
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| T |
8072776 |
aataaataaaatgcacacaagaacacaaatgattgatcacatagttcgactaattgtgcctacgtttccgacagcaaagtggctgatgtagtttttctat |
8072875 |
T |
|
| Q |
216 |
tatgcaattcttacgattgcaaagtacaatgacgtgtttaaatactatgctccatcgactgactacttatcagagaatacgagtcatactcaacacaatc |
315 |
Q |
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| T |
8072876 |
tatgcaattcttacgattgcaaagtacaatgtcgtgtttaaatactatgctccatcgactgactacttatcagcgaatacgagtcatactcaacacaatc |
8072975 |
T |
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| Q |
316 |
atcgatctttaagttttgctagttccatgaaagctaaaatgcttatttatcgttccatggaagtttaacagtcgttattgtttgctttgtcaggctttag |
415 |
Q |
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| T |
8072976 |
atcgatctttaagttttgctagttccatgaaagctaaaatgcttatttatcgttccatggaagtttaacagtcgttattgtttgctttgtcaggctttag |
8073075 |
T |
|
| Q |
416 |
aggattcactggttaagcaagaggagatttcggcttatgttgagcagaaaaaacagaatagaagaaagtgtgtatgtacacaaccaatgcaatatctata |
515 |
Q |
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| T |
8073076 |
aggattcactggttaagcaagaggagatttcggcttatgttgagcagaaaaaacagaatagaagaaagtgtgtatgtacacaaccaatgcaatatctata |
8073175 |
T |
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| Q |
516 |
cctactttaactttactacttactaccaatgc |
547 |
Q |
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| T |
8073176 |
cctactttaactttactacttactaccaatgc |
8073207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 4008896 - 4008795
Alignment:
| Q |
103 |
tctaaagaaaacaaataaataaaatgcacaccagaacacaaatgattgatcacatagttcgactaattgtgcctacgtttccgacagaaaagtggttgat |
202 |
Q |
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| T |
4008896 |
tctaaagaaaacagaaaaataaa-tgcacagaaaaacacaa-tgattgatcacaaagtttggctaattgtgtctacgtctccgacagtagggtggttgtt |
4008799 |
T |
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| Q |
203 |
gtag |
206 |
Q |
| |
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|||| |
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| T |
4008798 |
gtag |
4008795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 47472589 - 47472497
Alignment:
| Q |
103 |
tctaaagaaaacaaataaataaaatgcacaccagaacacaaatgattgatcacatagttcgactaattgtgcctacgtttccgacagaaaagtg |
196 |
Q |
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|||||||||||||||||||| ||||||||| |||||| |||||||| ||||| || | | |||||| ||||||| |||||||| |||||| |
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| T |
47472589 |
tctaaagaaaacaaataaat-aaatgcacagaagaacataaatgatttatcacgtaatctggtcaattgttcctacgtctccgacagcaaagtg |
47472497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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