View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_35 (Length: 554)
Name: NF1498_low_35
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 9e-90; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 269 - 524
Target Start/End: Original strand, 19939028 - 19939282
Alignment:
| Q |
269 |
ctttggtttctaggttctacattaggtttcctggcaaatggcgttgtaatgttcacttgttgaaagttttcatacattggatgatgttaggggatttaaa |
368 |
Q |
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| T |
19939028 |
ctttgatttctaggttctacattaggtttcctggcaaatgccattgtaatgttcacttgttgaaagttttcatacattggatgatgttaggggatttaaa |
19939127 |
T |
|
| Q |
369 |
cttttgccaaactcttgaaacttctagactgaagnnnnnnnncgagcttaattttctgcatatctatgtctgagataagaaaaattctaaggactattat |
468 |
Q |
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| T |
19939128 |
cttttgccaaactcttggaaattctaaattgaagttttttttcgagcttaattttctgtatatctatgt-tgagataagaaaaattctaatgaatattat |
19939226 |
T |
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| Q |
469 |
tttagtactaatttctagctcaatttgatggatcatatttttggaccgtttgaaat |
524 |
Q |
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| T |
19939227 |
tatagtactaatttctagctcaattcgatggatcatatttttggacagttcgaaat |
19939282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 269 - 524
Target Start/End: Original strand, 19915433 - 19915685
Alignment:
| Q |
269 |
ctttggtttctaggttctacattaggtttcctggcaaatggcgttgtaatgttcacttgttgaaagttttcatacattggatgatgttaggggatttaaa |
368 |
Q |
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|||||||||||||||||||||||||| || ||| |||||| | | ||||||||||||||||||| ||||||||||||| |||||||||| ||||||| || |
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| T |
19915433 |
ctttggtttctaggttctacattaggattactgccaaatgccctagtaatgttcacttgttgaatgttttcatacattagatgatgttacgggatttgaa |
19915532 |
T |
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| Q |
369 |
cttttgccaaactcttgaaacttctagactgaagnnnnnnnncgagcttaattttctgcatatctatgtctgagataagaaaaattctaaggactattat |
468 |
Q |
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| T |
19915533 |
cttttgctaaactcttggaacttctagattgaa-aatttattctaacttagacttctgcatgtctatgt-tgagataagaaaatttc-aatggccattac |
19915629 |
T |
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| Q |
469 |
tttagtactaatttctagctcaatttgatggatcatatttttggaccgtttgaaat |
524 |
Q |
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| T |
19915630 |
tatagtacttatttctagctcaatttggtggatcatatttttggacagtttgaaat |
19915685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 19938603 - 19938706
Alignment:
| Q |
147 |
aagcaaaatgacattggcaagtgcttgcgaaacgataggggagaatttgttcaagacaaaaaattgttcaagtctgcaattttgtcactgaggctgagac |
246 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| | ||||||||||||| ||| ||||||| |
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| T |
19938603 |
aagcaaaatgacattggcaagtgcttgcgaaacgataaggaagaattagttcaagacaaaaaattgttcaagaccgcaattttgtcaccgagtctgagac |
19938702 |
T |
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| Q |
247 |
tttt |
250 |
Q |
| |
|
|||| |
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| T |
19938703 |
tttt |
19938706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 147 - 273
Target Start/End: Original strand, 19939796 - 19939923
Alignment:
| Q |
147 |
aagcaaaatgacattggcaagtgcttgcgaaacgataggggagaatttgttcaagacaaaaaattgttcaagtctgcaattttgtcactgaggctgagac |
246 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| || ||||||| |||| ||||||| ||||||||||| |
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| T |
19939796 |
aagcaaaatgacattggcaagtgcttgcgaaacgttaagggagaattcgttcaagacaaattttttttcaagttctcaatattgtcacagaggctgagac |
19939895 |
T |
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| Q |
247 |
ttttgatatagcgga-gctgtttctttg |
273 |
Q |
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||||| ||||| ||| |||||||||||| |
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| T |
19939896 |
ttttgttatagtggaggctgtttctttg |
19939923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 19938517 - 19938574
Alignment:
| Q |
90 |
atgtaaatgcaaatgcttttaaatgtcagaagctgaacttgtgggatttcaagtgcaa |
147 |
Q |
| |
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| T |
19938517 |
atgtaaatgcaaatgcttttaaatggcagaagctgaacttgtgggatttcaagtgcaa |
19938574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19935309 - 19935362
Alignment:
| Q |
1 |
ctagatataacgtaattttc-atattactagatacatttatctattttaaatat |
53 |
Q |
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||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
19935309 |
ctagatatagtgtaattttcgatattactagatacatttatttattttaaatat |
19935362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 314 - 525
Target Start/End: Complemental strand, 32843571 - 32843362
Alignment:
| Q |
314 |
gtaatgttcacttgttgaaagttttcatacattggatgatgttaggggatttaaacttttgccaaactcttgaaacttctagactgaagnnnnnnnncga |
413 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||| ||||||| |||||| |||||||||||| |||||||||| |||| | | |
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| T |
32843571 |
gtaatgttcacttgatgaaagttttcatacattagatgatgttacgggatttgaactttcgccaaactcttggaacttctagattgaa-tttttattcta |
32843473 |
T |
|
| Q |
414 |
gcttaattttctgcatatctatgtctgagataagaaaaattctaaggactattattttagtactaatttctagctcaatttgatggatcatatttttgga |
513 |
Q |
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|||||| ||||| | |||||||||| || |||||||| || ||| |||||||||| ||| ||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
32843472 |
gcttaaatttctacgtatctatgtc-gaaataagaaattttttaatgactattattgtagcacttatttctatctcaatttgttggatcatatttttgga |
32843374 |
T |
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| Q |
514 |
ccgtttgaaata |
525 |
Q |
| |
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| |||||||||| |
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| T |
32843373 |
cagtttgaaata |
32843362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 269 - 383
Target Start/End: Complemental strand, 32838082 - 32837968
Alignment:
| Q |
269 |
ctttggtttctaggttctacattaggtttcctggcaaatggcgttgtaatgttcacttgttgaaagttttcatacattggatgatgttaggggatttaaa |
368 |
Q |
| |
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||||||| |||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |
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| T |
32838082 |
ctttggtatctaggttctacattaggactactggcaaatgcctttgtaatgttcacttgttgaaagttttcatacattagatgatgttacgggatttgag |
32837983 |
T |
|
| Q |
369 |
cttttgccaaactct |
383 |
Q |
| |
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||||||||||||||| |
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|
| T |
32837982 |
cttttgccaaactct |
32837968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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