View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_36 (Length: 553)

Name: NF1498_low_36
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_36
NF1498_low_36
[»] chr4 (49 HSPs)
chr4 (15-338)||(50251018-50251341)
chr4 (339-536)||(50250767-50250964)
chr4 (352-499)||(50668966-50669113)
chr4 (346-490)||(37827017-37827161)
chr4 (54-186)||(45372419-45372551)
chr4 (351-483)||(49044226-49044358)
chr4 (86-170)||(7822585-7822669)
chr4 (87-183)||(7904649-7904745)
chr4 (48-187)||(7238081-7238220)
chr4 (128-187)||(49041499-49041558)
chr4 (122-184)||(7771056-7771118)
chr4 (339-401)||(48875747-48875809)
chr4 (352-406)||(48891326-48891380)
chr4 (49-190)||(7774187-7774328)
chr4 (346-499)||(7877634-7877787)
chr4 (86-187)||(7907941-7908042)
chr4 (122-187)||(48891061-48891126)
chr4 (433-482)||(49048613-49048662)
chr4 (86-168)||(7813096-7813178)
chr4 (441-499)||(7908325-7908383)
chr4 (49-155)||(50668622-50668728)
chr4 (438-487)||(45384903-45384952)
chr4 (119-187)||(48170947-48171018)
chr4 (438-487)||(48735417-48735466)
chr4 (344-393)||(48870448-48870497)
chr4 (344-393)||(48886134-48886183)
chr4 (48-184)||(7789667-7789803)
chr4 (86-170)||(7800253-7800337)
chr4 (134-190)||(7877384-7877440)
chr4 (438-494)||(48147745-48147801)
chr4 (439-482)||(7237763-7237806)
chr4 (346-413)||(7237820-7237887)
chr4 (439-482)||(7771396-7771439)
chr4 (439-482)||(7790081-7790124)
chr4 (433-472)||(7813469-7813508)
chr4 (433-472)||(7822958-7822997)
chr4 (86-184)||(45366582-45366683)
chr4 (116-187)||(48156788-48156859)
chr4 (128-186)||(48862899-48862960)
chr4 (345-407)||(48705465-48705527)
chr4 (49-155)||(48902529-48902635)
chr4 (116-182)||(50672166-50672232)
chr4 (351-396)||(48852576-48852621)
chr4 (433-494)||(48852658-48852719)
chr4 (438-487)||(48902929-48902978)
chr4 (86-187)||(49044590-49044691)
chr4 (439-487)||(48705394-48705442)
chr4 (116-183)||(48898368-48898438)
chr4 (348-396)||(49048701-49048749)
[»] chr7 (1 HSPs)
chr7 (352-494)||(48883712-48883854)
[»] chr8 (5 HSPs)
chr8 (346-483)||(12200212-12200349)
chr8 (346-483)||(12444640-12444777)
chr8 (119-175)||(12199956-12200012)
chr8 (119-175)||(12444384-12444440)
chr8 (73-187)||(15348465-15348579)
[»] chr3 (7 HSPs)
chr3 (48-178)||(11006332-11006462)
chr3 (346-409)||(47452011-47452074)
chr3 (434-494)||(11005981-11006041)
chr3 (434-494)||(11024556-11024616)
chr3 (86-156)||(47452299-47452369)
chr3 (346-391)||(11006078-11006123)
chr3 (346-391)||(11015641-11015686)
[»] chr5 (5 HSPs)
chr5 (92-187)||(29687673-29687768)
chr5 (51-186)||(1812006-1812141)
chr5 (436-487)||(42562375-42562426)
chr5 (438-494)||(29696203-29696259)
chr5 (346-405)||(42562439-42562498)
[»] chr6 (5 HSPs)
chr6 (433-481)||(21015801-21015849)
chr6 (346-396)||(21015714-21015764)
chr6 (433-482)||(21979678-21979727)
chr6 (339-412)||(21979751-21979824)
chr6 (116-170)||(21980022-21980076)
[»] scaffold0508 (1 HSPs)
scaffold0508 (122-186)||(11914-11978)
[»] chr1 (4 HSPs)
chr1 (134-186)||(24309841-24309893)
chr1 (438-494)||(24367144-24367200)
chr1 (438-494)||(24369477-24369533)
chr1 (438-494)||(24310168-24310224)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 15 - 338
Target Start/End: Complemental strand, 50251341 - 50251018
Alignment:
Q  15 agcaaaggatggagaggaagacacagccaaaagtgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaatt 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50251341 agcaaaggatggagaagaagacacagccaaaagtgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctcttatacaatt 50251242  T
Q  115 aaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttaccacctccactgcacaaactcctcctaga 214  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251241 aaagtgggtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttaccacctccactgcacaaactcctcctaga 50251142  T
Q  215 attctagccataatggaagattcacctcatgaagtttattctatagattttgaatcgtcccactattatgcttctttagtgaaccttactaagtcttgtt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251141 attctagccataatggaagattcacctcatgaagtttattctatagattttgaatcgtcccactattatgcttctttagtgaaccttactaagtcttgtt 50251042  T
Q  315 tgattccccaatctcataattttc 338  Q
    ||||||||||||||||||||||||    
T  50251041 tgattccccaatctcataattttc 50251018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 339 - 536
Target Start/End: Complemental strand, 50250964 - 50250767
Alignment:
Q  339 tcaagcctctacctatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattccaaattaaagaaatatcattccaatcatctat 438  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250964 tcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctttgtctcattttgattccaaattaaagaaatatcattccaatcatctat 50250865  T
Q  439 atggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctatcatccttatgattataatgattcatcacatttggagtttttt 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250864 atggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctatcatccttatgattataatgattcatcacatttggagtttttt 50250767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 352 - 499
Target Start/End: Original strand, 50668966 - 50669113
Alignment:
Q  352 tatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattccaaattaaagaaatatcattccaatcatctatatggttttggtta 451  Q
    ||||||||||||||||  |  |||| | ||| ||||| ||||||| ||||||| ||||| ||||| |||||||||   ||||||||||||||||||||||    
T  50668966 tatggaatccatccaccagatttcataaacagataccattgtctccttttgataccaaactaaaggaatatcattttgatcatctatatggttttggtta 50669065  T
Q  452 tgaccactcaacagatgattatttggtggtttcaatatcctatcatcc 499  Q
    |||||  |||| ||||||||| ||||| |||||| | |||||| ||||    
T  50669066 tgaccggtcaagagatgattacttggttgtttcattgtcctatgatcc 50669113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 346 - 490
Target Start/End: Complemental strand, 37827161 - 37827017
Alignment:
Q  346 tctacctatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattccaaattaaagaaatatcattccaatcatctatatggttt 445  Q
    ||||| |||||||||||||||||||  |||||| ||||||||| ||||||| |||| | ||||| ||  |  ||||| ||| |  |  ||||||||||||    
T  37827161 tctacatatggaatccatccactggatttcacaaacaaatacccttgtctccttttaactccaatttggaagaatattatttcggttctctatatggttt 37827062  T
Q  446 tggttatgaccactcaacagatgattatttggtggtttcaatatc 490  Q
    |||||||||||| || | ||||||||| ||||| |||||||||||    
T  37827061 tggttatgaccagtctagagatgattacttggttgtttcaatatc 37827017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 45372551 - 45372419
Alignment:
Q  54 tgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctga 153  Q
    ||||||| |||||||| | ||||||| || | |||||||| |||||| |||| ||||  || || ||||||| |||||||||||||||| ||||||||||    
T  45372551 tgcctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctga 45372452  T
Q  154 tccccactgtgcaaatttgcattttcaacttac 186  Q
    ||| || | ||||||||  ||||||||| ||||    
T  45372451 tcctcattttgcaaattcacattttcaaattac 45372419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 483
Target Start/End: Complemental strand, 49044358 - 49044226
Alignment:
Q  351 ctatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattccaaatta-aagaaatatcattccaatcatctatatggttttggt 449  Q
    |||||||||||||||||| |  |||||| ||||||||||||||||| || || |||| | ||| |||  | ||||||||   ||||||||| |||||||     
T  49044358 ctatggaatccatccactagagttcacaaacaaatacctttgtctccttatggttcctatttacaagtca-atcattccttacatctatattgttttggg 49044260  T
Q  450 tatgaccactcaacagatgattatttggtggttt 483  Q
    ||||| |  |||||||||||||||||||||||||    
T  49044259 tatgatccgtcaacagatgattatttggtggttt 49044226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 7822585 - 7822669
Alignment:
Q  86 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatt 170  Q
    |||||||| ||||||  ||| ||||  || |||||||||| ||| || |||||||||||||||||||||||||||| ||||||||    
T  7822585 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatccccactttgcaaatt 7822669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 7904649 - 7904745
Alignment:
Q  87 ggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaact 183  Q
    ||||||| |||||| |||| ||||  || || ||||||| |||||  ||||||||||||||||||||||| |||| ||||||||  |||||||||||    
T  7904649 ggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaact 7904745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 7238220 - 7238081
Alignment:
Q  48 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttat 147  Q
    ||||||||||||| ||| | ||||  |||||| |  | ||||||||||||||| |||| ||    || || ||||||| |||||||||||||||||||||    
T  7238220 tgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttat 7238121  T
Q  148 ctctgatccccactgtgcaaatttgcattttcaacttacc 187  Q
    |||||| || |||| ||||||||  ||||| |||| ||||    
T  7238120 ctctgaccctcactttgcaaattcacatttccaacatacc 7238081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 49041558 - 49041499
Alignment:
Q  128 aagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttacc 187  Q
    |||||||||||||||||||||||||||||||| | ||||||||  |||||| ||||||||    
T  49041558 aagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaacttacc 49041499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 7771056 - 7771118
Alignment:
Q  122 gtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaactt 184  Q
    |||| |||||||||||||||||||||||||||||| |||| || |||||  ||||||||||||    
T  7771056 gtttgtaagtcttggttttctcttatctctgatcctcactttgaaaattcacattttcaactt 7771118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 48875747 - 48875809
Alignment:
Q  339 tcaagcctctacctatggaatccatccactgggcttcacatacaaatacctttgtctcatttt 401  Q
    ||||||||||||||||||||||||||||| ||  |||||| |||||||||| |||||| ||||    
T  48875747 tcaagcctctacctatggaatccatccaccggatttcacaaacaaatacctatgtctcctttt 48875809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 352 - 406
Target Start/End: Original strand, 48891326 - 48891380
Alignment:
Q  352 tatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattc 406  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||    
T  48891326 tatggaatccatccactggacttcacaaacaaatacctttgtctcctattgattc 48891380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 7774328 - 7774187
Alignment:
Q  49 gtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatc 148  Q
    |||||| ||||| |||||||| | |||||| ||  |  || |||| |||||| |||| || || || || ||||||| ||||   |||||||||||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatc 7774229  T
Q  149 tctgatccccactgtgcaaatttgcattttcaacttaccacc 190  Q
    ||||||||||| | ||||||||  ||||||||||| ||||||    
T  7774228 tctgatccccattttgcaaattcacattttcaactcaccacc 7774187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 499
Target Start/End: Original strand, 7877634 - 7877787
Alignment:
Q  346 tctacctatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattccaaattaaagaaatatcattccaatcatctatatggttt 445  Q
    ||||| |||||||||||||||||||  || | | |||||||||| |||||| ||||  ||||||||||     ||||  |  || | || || |||||||    
T  7877634 tctacatatggaatccatccactggatttaaaaaacaaatacctgtgtctccttttcgttccaaattagcagcatattgtcgcattgatatacatggttt 7877733  T
Q  446 tggttatgaccactcaacagatgattatttggtggtttcaatatcctatcatcc 499  Q
    |||||||||||| |||| ||||||||| |||||||||||| | |||||| ||||    
T  7877734 tggttatgaccaatcaagagatgattacttggtggtttcattgtcctataatcc 7877787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 7907941 - 7908042
Alignment:
Q  86 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaactta 185  Q
    |||||||| |||||| |||| | ||  || |||| ||||  |||||| ||||||||||||||||||| |||||| | ||||||||  |||||||||||||    
T  7907941 aggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaactta 7908040  T
Q  186 cc 187  Q
    ||    
T  7908041 cc 7908042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 48891061 - 48891126
Alignment:
Q  122 gtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttacc 187  Q
    |||| ||||||||||||||||||| |||| ||||| || | |||||||| ||||||||||||||||    
T  48891061 gtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttacc 48891126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 49048662 - 49048613
Alignment:
Q  433 atctatatggttttggttatgaccactcaacagatgattatttggtggtt 482  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  49048662 atctatatggttttgggtatgacccatcaacagatgattatttggtggtt 49048613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 7813096 - 7813178
Alignment:
Q  86 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaa 168  Q
    |||||||| ||||||  ||| ||||  || |||||||||| ||| || |||||||||||||||||||| ||||||| ||||||    
T  7813096 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgaaccccactttgcaaa 7813178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 499
Target Start/End: Original strand, 7908325 - 7908383
Alignment:
Q  441 ggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctatcatcc 499  Q
    ||||||||||||||||| |||| ||||||||| |||||||||||| | |||||| ||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcctataatcc 7908383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 50668622 - 50668728
Alignment:
Q  49 gtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatc 148  Q
    |||||||| | |||||||||||| ||||||||| || |||||||| |||||   ||| ||||  || ||||| |||| ||| |||||||||||||| |||    
T  50668622 gtatctgcattacgaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatc 50668721  T
Q  149 tctgatc 155  Q
    || ||||    
T  50668722 tccgatc 50668728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 45384952 - 45384903
Alignment:
Q  438 tatggttttggttatgaccactcaacagatgattatttggtggtttcaat 487  Q
    ||||||||||| ||||| || |||||| ||||||||||||||||||||||    
T  45384952 tatggttttgggtatgatcagtcaacaaatgattatttggtggtttcaat 45384903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 48171018 - 48170947
Alignment:
Q  119 tgtgtttctaagtcttggttttctcttatctc---tgatccccactgtgcaaatttgcattttcaacttacc 187  Q
    ||||||| ||||||||||||| ||||||||||   |||||| |||| |||||||| |||||||||| |||||    
T  48171018 tgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaattcgcattttcaaattacc 48170947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 48735466 - 48735417
Alignment:
Q  438 tatggttttggttatgaccactcaacagatgattatttggtggtttcaat 487  Q
    ||||||||||| |||||||| | |||||||||||| ||||||||||||||    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggtttcaat 48735417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 48870448 - 48870497
Alignment:
Q  344 cctctacctatggaatccatccactgggcttcacatacaaatacctttgt 393  Q
    |||||||||||||||||||||||| ||  |||||| ||||||||||||||    
T  48870448 cctctacctatggaatccatccaccggatttcacaaacaaatacctttgt 48870497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 48886134 - 48886183
Alignment:
Q  344 cctctacctatggaatccatccactgggcttcacatacaaatacctttgt 393  Q
    |||||||||||||||||||||||| ||  |||||| ||||||||||||||    
T  48886134 cctctacctatggaatccatccaccggatttcacaaacaaatacctttgt 48886183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 7789667 - 7789803
Alignment:
Q  48 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttat 147  Q
    ||||||||||||| ||| |||| |  |||||| |  | |||||||| |||||| |||| |||   || || || |||| |||||||||||||||| ||||    
T  7789667 tgtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttat 7789766  T
Q  148 ctctgatccccactgtgcaaatttgcattttcaactt 184  Q
    ||| ||||| |||| || |||||  ||||||||||||    
T  7789767 ctccgatcctcactttgaaaattcacattttcaactt 7789803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 7800253 - 7800337
Alignment:
Q  86 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatt 170  Q
    |||||||| ||||||  ||| ||||  || |||||||||| ||| || |||||||||||| |||||||||||| || ||||||||    
T  7800253 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctgatccccgctttgcaaatt 7800337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 7877384 - 7877440
Alignment:
Q  134 tggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttaccacc 190  Q
    |||||||||||||||||||||||| | | ||||||||  ||||||||||| ||||||    
T  7877384 tggttttctcttatctctgatcccaattttgcaaattcacattttcaactcaccacc 7877440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 494
Target Start/End: Complemental strand, 48147801 - 48147745
Alignment:
Q  438 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 494  Q
    ||||||||||| |||||||| | |||||||||||| |||||||||||| | ||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggtttcattctcctat 48147745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Complemental strand, 7237806 - 7237763
Alignment:
Q  439 atggttttggttatgaccactcaacagatgattatttggtggtt 482  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggtt 7237763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 7237887 - 7237820
Alignment:
Q  346 tctacctatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattccaaatta 413  Q
    ||||| |||||||||||||||||||  || | | |||||||||  |||||| ||||||||||||||||    
T  7237887 tctacgtatggaatccatccactggatttaaaaaacaaatacccgtgtctccttttgattccaaatta 7237820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 7771396 - 7771439
Alignment:
Q  439 atggttttggttatgaccactcaacagatgattatttggtggtt 482  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggtt 7771439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 7790081 - 7790124
Alignment:
Q  439 atggttttggttatgaccactcaacagatgattatttggtggtt 482  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggtt 7790124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 472
Target Start/End: Original strand, 7813469 - 7813508
Alignment:
Q  433 atctatatggttttggttatgaccactcaacagatgatta 472  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  7813469 atctatatggttttggttatgaccagtcaagagatgatta 7813508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 472
Target Start/End: Original strand, 7822958 - 7822997
Alignment:
Q  433 atctatatggttttggttatgaccactcaacagatgatta 472  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  7822958 atctatatggttttggttatgaccagtcaagagatgatta 7822997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 45366683 - 45366582
Alignment:
Q  86 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctc---tgatccccactgtgcaaatttgcattttcaac 182  Q
    ||||| ||||||||| |||| ||||  || ||||| |||| ||||| ||||||||||||||||||   |||| | |||| ||||||||  ||||||||||    
T  45366683 aggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctcgtgattcacactttgcaaattcacattttcaac 45366584  T
Q  183 tt 184  Q
    ||    
T  45366583 tt 45366582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 48156859 - 48156788
Alignment:
Q  116 aagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttacc 187  Q
    ||||| |||| |||||||||||||||||||||||| ||| | || | ||||||||  ||||||||| |||||    
T  48156859 aagtgcgtttgtaagtcttggttttctcttatctccgatactcattttgcaaattctcattttcaaattacc 48156788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 48862899 - 48862960
Alignment:
Q  128 aagtcttggttttctcttatctc---tgatccccactgtgcaaatttgcattttcaacttac 186  Q
    |||||||||||||||||||||||   |||||| |||| ||||||||  ||||||||||||||    
T  48862899 aagtcttggttttctcttatctctcatgatcctcactttgcaaattcacattttcaacttac 48862960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 48705527 - 48705465
Alignment:
Q  345 ctctacctatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattcc 407  Q
    |||||||| ||||||||||| |||||  |||||| ||||||||||||||| | ||||| ||||    
T  48705527 ctctacctgtggaatccatctactggatttcacaaacaaatacctttgtcaccttttggttcc 48705465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 48902529 - 48902635
Alignment:
Q  49 gtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatc 148  Q
    |||||| ||||| ||||||||||  ||||||||     ||||||| || ||| ||||||| |  || || ||||||| |||||||||||||||||||||     
T  48902529 gtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttata 48902628  T
Q  149 tctgatc 155  Q
    |||||||    
T  48902629 tctgatc 48902635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 50672166 - 50672232
Alignment:
Q  116 aagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaac 182  Q
    ||||||||||||||||| ||| ||||||| |||||||||| | | | |||||| ||||| |||||||    
T  50672166 aagtgtgtttctaagtcatggctttctctcatctctgatcacaattttgcaaaattgcactttcaac 50672232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 48852576 - 48852621
Alignment:
Q  351 ctatggaatccatccactgggcttcacatacaaatacctttgtctc 396  Q
    ||||||||||||||||| ||  |||||| |||||||||||||||||    
T  48852576 ctatggaatccatccaccggagttcacaaacaaatacctttgtctc 48852621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 494
Target Start/End: Original strand, 48852658 - 48852719
Alignment:
Q  433 atctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 494  Q
    |||||||||||||||| |||||||  ||||| |||||||| ||||| |||| ||| ||||||    
T  48852658 atctatatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctat 48852719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 487
Target Start/End: Original strand, 48902929 - 48902978
Alignment:
Q  438 tatggttttggttatgaccactcaacagatgattatttggtggtttcaat 487  Q
    ||||||||||| ||||||||||||| ||||||||| ||| |||| |||||    
T  48902929 tatggttttgggtatgaccactcaagagatgattacttgatggtatcaat 48902978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 49044691 - 49044590
Alignment:
Q  86 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaactta 185  Q
    ||||||||||||| | ||||  |||  || |||||||||| |||||  |||||||||||||||||| |  |||||| ||||||||  |||||| || |||    
T  49044691 aggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacattttgaaatta 49044592  T
Q  186 cc 187  Q
    ||    
T  49044591 cc 49044590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 487
Target Start/End: Complemental strand, 48705442 - 48705394
Alignment:
Q  439 atggttttggttatgaccactcaacagatgattatttggtggtttcaat 487  Q
    |||||||||| ||||| || |||||||||||||| ||||| ||||||||    
T  48705442 atggttttggatatgatcagtcaacagatgattacttggttgtttcaat 48705394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 48898368 - 48898438
Alignment:
Q  116 aagtgtgtttctaagtcttggttttctcttatctc---tgatccccactgtgcaaatttgcattttcaact 183  Q
    |||||||||| |||||||||||| || ||||||||   |||| |||||| ||||||||  |||||||||||    
T  48898368 aagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaact 48898438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 49048749 - 49048701
Alignment:
Q  348 tacctatggaatccatccactgggcttcacatacaaatacctttgtctc 396  Q
    ||||| ||||||||||||||| |  |||||| |||||||||||||||||    
T  49048749 tacctttggaatccatccactagagttcacagacaaatacctttgtctc 49048701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 352 - 494
Target Start/End: Original strand, 48883712 - 48883854
Alignment:
Q  352 tatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattccaaattaaagaaatatcattccaatcatctatatggttttggtta 451  Q
    |||||||||||| ||||||  |||||| ||||||||||||||||| |||| ||||||  | | |   | || ||| | ||||||||||||||||||||||    
T  48883712 tatggaatccatacactggatttcacaaacaaatacctttgtctcctttttattccatttcagaagtacattatttcgatcatctatatggttttggtta 48883811  T
Q  452 tgaccactcaacagatgattatttggtggtttcaatatcctat 494  Q
    |||||  |||| |||||||||  ||||||||||||| ||||||    
T  48883812 tgacccgtcaagagatgattacatggtggtttcaatgtcctat 48883854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 483
Target Start/End: Original strand, 12200212 - 12200349
Alignment:
Q  346 tctacctatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattccaaattaaagaaatatcattccaatcatctatatggttt 445  Q
    ||||| |||||||||||||| || || |||||| | ||||||||||||||| ||||||||  || ||| |   ||| |||    ||||||||||||||||    
T  12200212 tctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctatatggttt 12200311  T
Q  446 tggttatgaccactcaacagatgattatttggtggttt 483  Q
    |||||||||||  |||| ||||||||| ||||||||||    
T  12200312 tggttatgaccggtcaagagatgattacttggtggttt 12200349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 483
Target Start/End: Original strand, 12444640 - 12444777
Alignment:
Q  346 tctacctatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattccaaattaaagaaatatcattccaatcatctatatggttt 445  Q
    ||||| |||||||||||||| || || |||||| | ||||||||||||||| ||||||||  || ||| |   ||| |||    ||||||||||||||||    
T  12444640 tctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctatatggttt 12444739  T
Q  446 tggttatgaccactcaacagatgattatttggtggttt 483  Q
    |||||||||||  |||| ||||||||| ||||||||||    
T  12444740 tggttatgaccggtcaagagatgattacttggtggttt 12444777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 12199956 - 12200012
Alignment:
Q  119 tgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcat 175  Q
    ||||||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  12199956 tgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcat 12200012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 12444384 - 12444440
Alignment:
Q  119 tgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcat 175  Q
    ||||||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  12444384 tgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcat 12444440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 15348465 - 15348579
Alignment:
Q  73 tcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttg 172  Q
    ||||||| |||  ||||| || |||||| |||| ||||  || || || |||| ||||||||||||||||||||||||||||||  |||  |||||||      
T  15348465 tcaaattctagagaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattca 15348564  T
Q  173 cattttcaacttacc 187  Q
    ||||||||| |||||    
T  15348565 cattttcaaattacc 15348579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 11006462 - 11006332
Alignment:
Q  48 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttat 147  Q
    ||||||||||||| ||||||||||  ||||| ||  | |||||||| |||||| | || ||||  || |||||||||| |||||| |||||  |||||||    
T  11006462 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 11006363  T
Q  148 ctctgatccccactgtgcaaatttgcatttt 178  Q
    ||||||||| |||| |||||| | |||||||    
T  11006362 ctctgatcctcactttgcaaaatcgcatttt 11006332  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 409
Target Start/End: Complemental strand, 47452074 - 47452011
Alignment:
Q  346 tctacctatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattccaa 409  Q
    ||||| |||||||||||||||||||  |||||| ||||||||||||| ||| ||||| ||||||    
T  47452074 tctacatatggaatccatccactggagttcacaaacaaatacctttgcctccttttggttccaa 47452011  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 11006041 - 11005981
Alignment:
Q  434 tctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 494  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||| ||| | ||||||    
T  11006041 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 11005981  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 11024616 - 11024556
Alignment:
Q  434 tctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 494  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||| ||| | ||||||    
T  11024616 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 11024556  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 47452369 - 47452299
Alignment:
Q  86 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatcc 156  Q
    |||||||| |||||| ||||  |||  || |||||  |||||||||| |||||||||||||||||||||||    
T  47452369 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 47452299  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 11006123 - 11006078
Alignment:
Q  346 tctacctatggaatccatccactgggcttcacatacaaataccttt 391  Q
    ||||||||||||||||||||||||| | || || ||||||||||||    
T  11006123 tctacctatggaatccatccactggacgtctcagacaaataccttt 11006078  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 11015686 - 11015641
Alignment:
Q  346 tctacctatggaatccatccactgggcttcacatacaaataccttt 391  Q
    ||||||||||||||||||| ||||| | ||||| ||||||||||||    
T  11015686 tctacctatggaatccatcaactggacatcacaaacaaataccttt 11015641  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 29687673 - 29687768
Alignment:
Q  92 ccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttacc 187  Q
    ||||||||| |||| ||||  || |||||||||| |||||||||||||||||| || ||| | || |||| ||||||||  |||||||||||||||    
T  29687673 ccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacc 29687768  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 1812006 - 1812141
Alignment:
Q  51 atctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctc 150  Q
    |||| ||||| ||| |||||  |||||||||  | ||||| |||||||||  ||||||||  |  || || |||| |||||  |||||||||||||||||    
T  1812006 atcttcctcaggaactgatcgttcaaattttgttgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T
Q  151 tgatccccactgtgcaaatttgcattttcaacttac 186  Q
      ||||||||| ||||||||  ||||||||||||||    
T  1812106 aaatccccactttgcaaattatcattttcaacttac 1812141  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 487
Target Start/End: Complemental strand, 42562426 - 42562375
Alignment:
Q  436 tatatggttttggttatgaccactcaacagatgattatttggtggtttcaat 487  Q
    ||||||||||||| ||||| ||||||||| |||||||||| |||||||||||    
T  42562426 tatatggttttgggtatgatcactcaacaaatgattatttagtggtttcaat 42562375  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 494
Target Start/End: Original strand, 29696203 - 29696259
Alignment:
Q  438 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 494  Q
    ||||||||||| |||||| | |||||||||||||| |||||| ||||||| ||||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctat 29696259  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 405
Target Start/End: Complemental strand, 42562498 - 42562439
Alignment:
Q  346 tctacctatggaatccatccactgggcttcacatacaaatacctttgtctcattttgatt 405  Q
    |||||||||||||||||||||  || | ||||| ||||||||||||||||| | ||||||    
T  42562498 tctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgatt 42562439  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 481
Target Start/End: Original strand, 21015801 - 21015849
Alignment:
Q  433 atctatatggttttggttatgaccactcaacagatgattatttggtggt 481  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||||    
T  21015801 atctatatggttttgggtatgacccatcaacagatgattatttggtggt 21015849  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 21015714 - 21015764
Alignment:
Q  346 tctacctatggaatccatccactgggcttcacatacaaatacctttgtctc 396  Q
    ||||||||||||||||||||||| |  |||||| |||||||||||||||||    
T  21015714 tctacctatggaatccatccactagagttcacaaacaaatacctttgtctc 21015764  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 21979727 - 21979678
Alignment:
Q  433 atctatatggttttggttatgaccactcaacagatgattatttggtggtt 482  Q
    ||||||||||||||||||||||||| |||| | ||||||| |||||||||    
T  21979727 atctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 21979824 - 21979751
Alignment:
Q  339 tcaagcctctacctatggaatccatccactgggcttcacatacaaatacctttgtctcattttgattccaaatt 412  Q
    ||||| |||||| ||||||| || || ||||| ||||| | ||||||||||||||||| | |||||||||||||    
T  21979824 tcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctcctcttgattccaaatt 21979751  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 21980076 - 21980022
Alignment:
Q  116 aagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatt 170  Q
    |||||||||| |||||||||||||||||| |||||| ||||| ||| ||| ||||    
T  21980076 aagtgtgtttgtaagtcttggttttctctcatctctcatcccaactttgcgaatt 21980022  T

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Target: scaffold0508 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 11914 - 11978
Alignment:
Q  122 gtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttac 186  Q
    |||| |||||| |||||||||||||||||||||   |||| ||||||||  ||||||||||||||    
T  11914 gtttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaacttac 11978  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 24309841 - 24309893
Alignment:
Q  134 tggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttac 186  Q
    ||||||||||||||||||||| | |||| ||||||||  ||||||||||||||    
T  24309841 tggttttctcttatctctgattctcactttgcaaattcacattttcaacttac 24309893  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 494
Target Start/End: Original strand, 24367144 - 24367200
Alignment:
Q  438 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 494  Q
    ||||||||||| |||||| | |||||||||||||| |||||||||||  ||||||||    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggtttcgttatcctat 24367200  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 494
Target Start/End: Original strand, 24369477 - 24369533
Alignment:
Q  438 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 494  Q
    ||||||||||| |||||| | ||||||||||||||  ||||||||||| ||||||||    
T  24369477 tatggttttggctatgacgagtcaacagatgattacctggtggtttcagtatcctat 24369533  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 494
Target Start/End: Original strand, 24310168 - 24310224
Alignment:
Q  438 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 494  Q
    |||||||||||||||||| | |||| ||||||||| ||||| |||| | ||||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctat 24310224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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