View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_37 (Length: 543)
Name: NF1498_low_37
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 25 - 530
Target Start/End: Original strand, 37851575 - 37852084
Alignment:
| Q |
25 |
gtgtgcagatatgtttttgcttcatcaaacgtcacttcaaagagtcacttagttaattagctttgcaagtggattcaatcaggggcaactctgtttttca |
124 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37851575 |
gtgtgcagatatatttttgtttcatcaaacgtcacttcaaagagtcacttagttaattagctttgcaagtggattcaatcaggggcaactctgattttca |
37851674 |
T |
|
| Q |
125 |
taggaccatgaatgtcctaagcaaaaggggtt--attggagggttgcatgtttctgtcattgcatatatattcatttcatca--gtaataaaatatttga |
220 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37851675 |
taggaccatgaatgtcctaagcaaaaggggttctattggagggttgcatgtttctgtcattgcatatatattcatttcatcaaagtaataaaatatttga |
37851774 |
T |
|
| Q |
221 |
caaataaaaaataataacatacatctaagacagacaatttatagggcttgtttattattgtactcttacatccagggactaattgtataacaaatgaaaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37851775 |
caaataaaaaataataacatacatctaagacagacaatttatagggcttgtttattattgtaatcttacatccagggactaattgtataacaaatgaaaa |
37851874 |
T |
|
| Q |
321 |
aataacggttaatctttttgtcatacagcaaaaccattaccgcaatttgtcccacacaccaattaactgcaggataattgatgtgaaagcacgtttcctc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37851875 |
aataacggttaatctttttgtcatacagcaaaaccattaccgcaatttgtcccacacaccaattaactgcaggataattgatgtgaaagcacgtttcctc |
37851974 |
T |
|
| Q |
421 |
cagctttactttacatttaagaagtcattcccagtattatactcagtgaaaatgtatataaagtgatttcttggagaatctcctctaacatgagcaacct |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37851975 |
cagctttactttacatttaagaagtcattcccagtattatactcagtgaaaatgtatataaagtgatttcttggagaatctcctctaacatgagcaacct |
37852074 |
T |
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| Q |
521 |
cctctctgct |
530 |
Q |
| |
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|||| ||||| |
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| T |
37852075 |
cctccctgct |
37852084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 471 - 530
Target Start/End: Original strand, 32556864 - 32556923
Alignment:
| Q |
471 |
aatgtatataaagtgatttcttggagaatctcctctaacatgagcaacctcctctctgct |
530 |
Q |
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| T |
32556864 |
aatgtatataaagtgatttcttggagaatctcctctaacatgagcaacctcctccctgct |
32556923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 30872632 - 30872685
Alignment:
| Q |
25 |
gtgtgcagatatgtttttgcttcatcaaacgtcacttcaaagagtcacttagtt |
78 |
Q |
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|||||||||| ||||||||||| ||||||||||||| |||| || |||| |||| |
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| T |
30872632 |
gtgtgcagatgtgtttttgctttatcaaacgtcactccaaacagacactaagtt |
30872685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 17409156 - 17409108
Alignment:
| Q |
28 |
tgcagatatgtttttgcttcatcaaacgtcacttcaaagagtcacttag |
76 |
Q |
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|||||||||| ||||||||||||||||| ||||||||| || ||||||| |
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| T |
17409156 |
tgcagatatgattttgcttcatcaaacgccacttcaaacagacacttag |
17409108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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