View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_low_38 (Length: 539)
Name: NF1498_low_38
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_38 |
 | |
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| [»] scaffold0391 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 13 - 526
Target Start/End: Original strand, 24695218 - 24695731
Alignment:
| Q |
13 |
aatatcgatcccacaaggttaggaagtcctttgggttgaggtaaggaaattgatgacagaaaatcttatagggtttttagtgttttcttgtcatcatttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
24695218 |
aatatcgatcccacaaggttaggaagtcctttgggttgaggtaaggaaattgatgacagaaaatcttatagggtttttattgttttcttgtcatcatttt |
24695317 |
T |
|
| Q |
113 |
agagtaaaattagttagtttatgcgtattttaatcgagttttgtaaagtaatcattcaaaaagtaatgaaagagcaacaatggaaaaaagaccttgaaac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
24695318 |
agagtaaaattagttagtttatgcgtattttaatcgagttttgtaaagtaatcattcaaaaagtcatgaaagagcaacaatggaaaaaagaccttgaaac |
24695417 |
T |
|
| Q |
213 |
atgtcaaagtcacccaaaccaaacaactctgatggaattgtgcttattacaagttttatcatgttaattcttggggtatagtcattacgaatattttggt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
24695418 |
atgtcaaagtcacccaaaccaaacaactctgatggaattgtgcttattacaagttttatcatgttaattcttggggtatagtcattacgaatgttttggt |
24695517 |
T |
|
| Q |
313 |
gatgagaattgggataagggatgaagaaaagcaggaaaaccagctaccgcctactttatgccgcatgctacgagccacgcatcgcgacattgaagttgct |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
24695518 |
gatgagaattgggataagggatgaagaaaagcaggaaaaccagctaccgcctactttatgccgcatgctacgagccatgcatcgcgacattgaagttgct |
24695617 |
T |
|
| Q |
413 |
actgcctcactcgcatcaccataagttttacattgtgagaaatagaagaattcaatagtggttgctcattgtattagtcgcatcacatactataaacttg |
512 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24695618 |
actgcctcactcgcatcaccataagctttacattgtgagatatagaagaattcaatagtggttgctcattgtattagtcgcatcacatactataaacttg |
24695717 |
T |
|
| Q |
513 |
cattgcgagaactg |
526 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24695718 |
cattgcgagaactg |
24695731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 84 - 299
Target Start/End: Original strand, 12353828 - 12354045
Alignment:
| Q |
84 |
ggtttttagtgttttcttgtcatcattttagagtaaaattagttagtttatgcgtattttaatcgagttttgtaaagtaatcattcaaaaagtaatgaaa |
183 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||| ||||||| || | ||||| ||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
12353828 |
ggtttttagtgtcgtcttgtcatcattttaaagtaaaagtagttagcctacatatgttttagtcgagttttgtaaagtaatcactcaaaaagtcttgaaa |
12353927 |
T |
|
| Q |
184 |
gagcaacaatggaaaaaagaccttgaaacatgtcaaagtcacccaaaccaaacaa-ctc-tgatggaattgtgcttattacaagttttatcatgttaatt |
281 |
Q |
| |
|
|||||||||||| |||| ||| |||||| ||||||||||||| |||||| |||| ||| | | | | | ||||||||||||||||||||||||||| |
|
|
| T |
12353928 |
gagcaacaatgggaaaaggacattgaaagatgtcaaagtcacgtaaaccagacaacctcataaccttactatacttattacaagttttatcatgttaatt |
12354027 |
T |
|
| Q |
282 |
cttggggtatagtcatta |
299 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
12354028 |
cttgtggtatagtcatta |
12354045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 79 - 345
Target Start/End: Complemental strand, 16649592 - 16649322
Alignment:
| Q |
79 |
tatagggtttttagtgttttcttgtcatcattttagagtaaaattagttagtttatgcgtattttaatcgag-ttttgtaaagtaatcattcaaaaagta |
177 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||| |||||||||||| | || || ||| | |||||||||||||| |||||||| | |
|
|
| T |
16649592 |
tataaggtttttagtgtcgtcttgtcatcattttagagtaaaaatagttagtttatatatgttatagtcgggattttgtaaagtaataattcaaaacgcc |
16649493 |
T |
|
| Q |
178 |
atgaaagagcaacaatggaaaaaa-gaccttgaaacatgtcaaagtcacccaaaccaaacaac-tc-tgatggaattgtgcttattacaagttttatcat |
274 |
Q |
| |
|
||||||||| | |||| |||||| ||| ||| |||||| ||||||||| ||||| | ||||| || |||| | | | ||||||||| ||||||||| |
|
|
| T |
16649492 |
atgaaagagtagaaatgaaaaaaaagactttggaacatgccaaagtcactcaaactagacaacctcgtgatcatactatatttattacaatttttatcat |
16649393 |
T |
|
| Q |
275 |
gttaattcttggggtatagtcattacgaatattttggtgatgagaattgggataagggatgaagaaaagca |
345 |
Q |
| |
|
||||||| || |||||||||| |||| | ||||||||||| |||| || ||||||| || |||||||||| |
|
|
| T |
16649392 |
gttaattattagggtatagtcgttacatacattttggtgataagaaatgtgataaggaataaagaaaagca |
16649322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 109 - 300
Target Start/End: Complemental strand, 9026051 - 9025858
Alignment:
| Q |
109 |
ttttagagtaaaattagttagtttatgcgtattttaa-tcgagttttgtaaagtaatcattcaaaaagtaatgaaagagcaacaatgga-aaaaagacct |
206 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||| | | || |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |
|
|
| T |
9026051 |
ttttagagtaaaatttgttagttta--catatttttagttgatttttgtaaagtaatcattcaaaaagtcatgaaagagcgacaatgggcaaaaagacct |
9025954 |
T |
|
| Q |
207 |
tgaaacatgtcaaagtcacccaaaccaaacaactctg--atggaattgtgcttattacaagttttatcatgttaattcttggggtatagtcattac |
300 |
Q |
| |
|
| | |||| |||| | |||||||| | ||||||||| || | | | || |||| |||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
9025953 |
taacacataacaaaattacccaaactagacaactctgtgattgtactatgtttatcacaatttttatcatgttaatacttggggtataatcattac |
9025858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 34120618 - 34120511
Alignment:
| Q |
123 |
tagttagtttatgcgtattttaatcgagttttgtaaagtaatcattcaaaaagtaatgaaagagcaacaatggaaaaaagaccttgaaacatgtcaaagt |
222 |
Q |
| |
|
|||||| |||||| || ||||| | ||||||||||||| ||| ||||||| || ||||||||| || ||||| ||||| |||||||||||||| ||| | |
|
|
| T |
34120618 |
tagttaatttatgtgtgttttagttgagttttgtaaagaaatagttcaaaa-gtcatgaaagagaaaaaatgggaaaaataccttgaaacatgttaaaat |
34120520 |
T |
|
| Q |
223 |
cacccaaac |
231 |
Q |
| |
|
|| |||||| |
|
|
| T |
34120519 |
catccaaac |
34120511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 11112074 - 11112191
Alignment:
| Q |
184 |
gagcaacaatggaaaaaagaccttgaaacatgtcaaagtcacccaaaccaaacaactctgatg--gaattgtgcttattacaagttttatcatgttaatt |
281 |
Q |
| |
|
|||||||||||||||||| || |||||| || ||||| ||| |||||| | |||||| || | | ||| |||||| ||||||||||||||||||| || |
|
|
| T |
11112074 |
gagcaacaatggaaaaaaaac-ttgaaatatatcaaaatcatccaaacgagacaactatgttaccgtattatgcttactacaagttttatcatgttagtt |
11112172 |
T |
|
| Q |
282 |
cttggggtatagtcattac |
300 |
Q |
| |
|
||||| |||||||| |||| |
|
|
| T |
11112173 |
cttggagtatagtccttac |
11112191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 16649705 - 16649650
Alignment:
| Q |
79 |
tatagggtttttagtgttttcttgtcatcattttagagtaaaattagttagtttat |
134 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
16649705 |
tataaggtttttagtgtcgtcttgtcattattttagagtaaaaatagttagtttat |
16649650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 11111995 - 11112056
Alignment:
| Q |
67 |
gacagaaaatcttatagggtttttagtgttttcttgtcatcattttagagtaaaattagtta |
128 |
Q |
| |
|
|||| |||||| |||||| ||||||| ||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
11111995 |
gacaaaaaatcatataggatttttagagttgtctagtcatcattttagagtaaaagtagtta |
11112056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 354
Target Start/End: Complemental strand, 16380392 - 16380291
Alignment:
| Q |
253 |
tgcttattacaagttttatcatgttaattcttggggtatagtcattacgaatattttggtgatgagaattgggataagggatgaagaaaagcaggaaaac |
352 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||||||||||||| | |||| ||||||||||| | || | | ||||||||||||||||| || |
|
|
| T |
16380392 |
tgcttactataagttttagcatgttaattcttggggtatagtcattaccgacatttcggtgatgagaaataagacagagaatgaagaaaagcaggaagac |
16380293 |
T |
|
| Q |
353 |
ca |
354 |
Q |
| |
|
|| |
|
|
| T |
16380292 |
ca |
16380291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 16380544 - 16380502
Alignment:
| Q |
79 |
tatagggtttttagtgttttcttgtcatcattttagagtaaaa |
121 |
Q |
| |
|
||||||||||||||||| || |||||| ||||||||||||||| |
|
|
| T |
16380544 |
tatagggtttttagtgtcttattgtcaccattttagagtaaaa |
16380502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 24763481 - 24763420
Alignment:
| Q |
253 |
tgcttattacaagttttatcatgttaattcttggggtatagtcattacgaatattttggtga |
314 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| |||||||| | ||||||||| |
|
|
| T |
24763481 |
tgcttattacaagttttatcatgttaaattttggggtataatcattacggacgttttggtga |
24763420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 26166262 - 26166323
Alignment:
| Q |
253 |
tgcttattacaagttttatcatgttaattcttggggtatagtcattacgaatattttggtga |
314 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
26166262 |
tgcttattacaaatttaatcatgttaggtcttggggtatagtcattacaaatgttttggtga |
26166323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 6054412 - 6054479
Alignment:
| Q |
106 |
tcattttagagtaaaattagttagtttatgcgtattttaatcgagttttgtaaagtaatcattcaaaa |
173 |
Q |
| |
|
|||||||||||| ||| |||| | |||||| |||||||| ||| ||||||||||| ||||||| |||| |
|
|
| T |
6054412 |
tcattttagagttaaagtagtcaatttatgtgtattttagtcgtgttttgtaaagaaatcatttaaaa |
6054479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 18440517 - 18440572
Alignment:
| Q |
119 |
aaattagttagtttatgcgtattttaatcgagttttgtaaagtaatcattcaaaaa |
174 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
18440517 |
aaattagttaacttatatgtattttagtcgagttttgtaaagaaatcattcaaaaa |
18440572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 15582 - 15439
Alignment:
| Q |
151 |
ttttgtaaagtaatcattcaaaaagtaatgaaagagcaacaatggaaaaaagaccttgaaacatgtcaaagtcacccaaaccaaacaa---ctctgatgg |
247 |
Q |
| |
|
|||||||||| |||| |||||||| || ||||||||||| |||| |||||| ||||| |||||||| || |||| ||| || |||| || ||| | |
|
|
| T |
15582 |
ttttgtaaaggaatcgttcaaaaa-tagtgaaagagcaaaaatgcaaaaaataccttaaaacatgtacaaatcactaaaatcagacaaaccctatgaccg |
15484 |
T |
|
| Q |
248 |
aattgtgcttattacaagttttatcatgttaattcttggggtata |
292 |
Q |
| |
|
||| ||||||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
15483 |
tattatgcttattacaaggtttataatgttaattcttgggatata |
15439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 1594290 - 1594322
Alignment:
| Q |
263 |
aagttttatcatgttaattcttggggtatagtc |
295 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
1594290 |
aagttttagcatgttaattcttggggtatagtc |
1594322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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