View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_40 (Length: 522)

Name: NF1498_low_40
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_40
NF1498_low_40
[»] chr1 (6 HSPs)
chr1 (252-504)||(8039624-8039868)
chr1 (46-177)||(47896877-47897008)
chr1 (245-412)||(47897077-47897244)
chr1 (248-412)||(27786265-27786429)
chr1 (46-180)||(8039419-8039550)
chr1 (47-177)||(27786501-27786631)
[»] chr3 (5 HSPs)
chr3 (245-416)||(46742447-46742618)
chr3 (47-175)||(11387656-11387784)
chr3 (300-412)||(11387885-11387997)
chr3 (47-177)||(46742687-46742817)
chr3 (245-275)||(11387854-11387884)
[»] scaffold0005 (1 HSPs)
scaffold0005 (46-173)||(270544-270671)
[»] chr8 (4 HSPs)
chr8 (252-412)||(38499614-38499774)
chr8 (46-177)||(38499406-38499537)
chr8 (47-177)||(10182274-10182403)
chr8 (245-409)||(10182471-10182632)
[»] chr7 (7 HSPs)
chr7 (49-177)||(34293339-34293467)
chr7 (46-180)||(10365989-10366122)
chr7 (49-177)||(32979456-32979584)
chr7 (249-396)||(32979653-32979800)
chr7 (245-377)||(10366181-10366313)
chr7 (311-411)||(36583085-36583185)
chr7 (52-96)||(36583037-36583081)
[»] scaffold0725 (2 HSPs)
scaffold0725 (245-410)||(1495-1660)
scaffold0725 (49-177)||(1298-1426)
[»] scaffold0088 (2 HSPs)
scaffold0088 (245-410)||(27411-27576)
scaffold0088 (49-177)||(27214-27342)
[»] chr2 (2 HSPs)
chr2 (245-409)||(1533682-1533846)
chr2 (47-177)||(1533483-1533613)
[»] chr6 (3 HSPs)
chr6 (49-177)||(9566999-9567128)
chr6 (245-419)||(9567197-9567368)
chr6 (46-172)||(11366917-11367032)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 252 - 504
Target Start/End: Original strand, 8039624 - 8039868
Alignment:
Q  252 acacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcacaccacca 351  Q
    |||||||||||||||| |||||||||||||||||||| || |||||||||||  |||| |||||||||||||||||||||||||||| ||||||||||||    
T  8039624 acacacaagaccatcgaagaacagtaaccttaacgtcggcgccgacatatctagcgtttagaggtggtgcggaggactggtgtcacttgtcacaccacca 8039723  T
Q  352 ccctgaccggctacatcttgcaaattgagggtttggattggggtgaaagaaggtgtaagcgacggctgacataatagttagctgtttggtgaaaatgaaa 451  Q
    |||||||||||||||        |||||||||||||||||||||| ||||||||||||||| | ||||  ||||||||||| |||||||||| |||||||    
T  8039724 ccctgaccggctaca--------attgagggtttggattggggtggaagaaggtgtaagcggcagctggtataatagttagttgtttggtgagaatgaaa 8039815  T
Q  452 ttcatttatcgcaaattttagataagtgaaaacttttgcttggtggtggttta 504  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8039816 ttcatttatcgcaaattttagataagtgaagacttttgcttggtggtggttta 8039868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 46 - 177
Target Start/End: Original strand, 47896877 - 47897008
Alignment:
Q  46 tacaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||    
T  47896877 tacaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactacaaaaccaccacgtcatcaccaccttcacgttctatcatcgcc 47896976  T
Q  146 aaaaccgtgccctactccaccacaacacacca 177  Q
    ||||||||||||||||||||||||||||||||    
T  47896977 aaaaccgtgccctactccaccacaacacacca 47897008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 245 - 412
Target Start/End: Original strand, 47897077 - 47897244
Alignment:
Q  245 aaccaaaacacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcac 344  Q
    ||||||||||||||||||||||||||||||  ||||||||||   ||||||||| ||||| |||| |||||||||||||||||| | ||||||||||| |    
T  47897077 aaccaaaacacacaagaccatcggagaacaacaaccttaacgctggcaccgacagatctggcgtttagaggtggtgcggaggaccgctgtcactcgtcgc 47897176  T
Q  345 accaccaccctgaccggctacatcttgcaaattgagggtttggattggggtgaaagaaggtgtaagcg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  47897177 accaccaccctgaccggctacatcttgcaaattgagggtttggattgaggtggaagaaggtgtaagcg 47897244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 248 - 412
Target Start/End: Complemental strand, 27786429 - 27786265
Alignment:
Q  248 caaaacacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcacacc 347  Q
    |||| ||||||||||||||||||||||  |||| |||||   || |||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||    
T  27786429 caaaccacacaagaccatcggagaacaacaaccataacgcaggcgccgacagatctggcgtttagaggtggtgcggaggactggtgtcactcgtcgcacc 27786330  T
Q  348 accaccctgaccggctacatcttgcaaattgagggtttggattggggtgaaagaaggtgtaagcg 412  Q
    ||||||||||||| |||||||||| |||||||||||||| |||| |||| |||||||||||||||    
T  27786329 accaccctgaccgactacatcttgtaaattgagggtttgtattgaggtggaagaaggtgtaagcg 27786265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 8039419 - 8039550
Alignment:
Q  46 tacaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcc 145  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8039419 tacaagtcatactcttctctccatcgatccaccaaaacatcatcttcgacaccattgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcc 8039518  T
Q  146 aaaaccgtgccctactccaccacaacacaccacca 180  Q
    |||||| ||||| |||   ||||||||||||||||    
T  8039519 aaaaccttgccccact---ccacaacacaccacca 8039550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 27786631 - 27786501
Alignment:
Q  47 acaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcca 146  Q
    ||||||| |||||||||||| || |||||||||||||| |||||||| |||||||| |||| |||| ||| |||||||||||||||| |||| ||||| |    
T  27786631 acaagtcggactcttctctcaactgatccaccaaaacatcatcgtcgccaccactgtaaaatcaccacgttatcaccaccttcacctcctataatcgcaa 27786532  T
Q  147 aaaccgtgccctactccaccacaacacacca 177  Q
    |||| ||| ||||||||||||||||||||||    
T  27786531 aaactgtgacctactccaccacaacacacca 27786501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 245 - 416
Target Start/End: Complemental strand, 46742618 - 46742447
Alignment:
Q  245 aaccaaaacacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcac 344  Q
    ||||||||||||||||||||||||||||||| |||||||||| | ||  ||||| ||||| |||| |||||||||||||||||||||||||||||||| |    
T  46742618 aaccaaaacacacaagaccatcggagaacagcaaccttaacgccggcgtcgacaaatctggcgtttagaggtggtgcggaggactggtgtcactcgtcgc 46742519  T
Q  345 accaccaccctgaccggctacatcttgcaaattgagggtttggattggggtgaaagaaggtgtaagcgacgg 416  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||    
T  46742518 accaccaccctgaccggctacatcttgtaaattgagggtttggattggggtggaagaaggtgtatgcgacgg 46742447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 11387656 - 11387784
Alignment:
Q  47 acaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcca 146  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||    
T  11387656 acaagtcagactcttctctccaccgatccaccaaaacagcatagtcgacaccactgcaaaaccaccacgtcatcatcaccttcaccttctatcatcgtca 11387755  T
Q  147 aaaccgtgccctactccaccacaacacac 175  Q
    ||| | |||| ||||||||||||||||||    
T  11387756 aaatcatgccatactccaccacaacacac 11387784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 300 - 412
Target Start/End: Original strand, 11387885 - 11387997
Alignment:
Q  300 atctgacgttgagaggtggtgcggaggactggtgtcactcgtcacaccaccaccctgaccggctacatcttgcaaattgagggtttggattggggtgaaa 399  Q
    ||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||    
T  11387885 atctggcgtttagaggtggtgcggaggactggtgtcactcgtcgcaccaccaccctgagcggctacatcttgcaaattgagggtttggatttgggtggaa 11387984  T
Q  400 gaaggtgtaagcg 412  Q
    |||||||||||||    
T  11387985 gaaggtgtaagcg 11387997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 46742817 - 46742687
Alignment:
Q  47 acaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcca 146  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||| ||||| || |||| |||| |||||||||||||||||||||  |||| |||||    
T  46742817 acaagtcggactcttctctccaccaatccaccaaaacagcatcgtcgccaccattgtaaaatcaccacgtcatcaccaccttcaccttacatcaccgcca 46742718  T
Q  147 aaaccgtgccctactccaccacaacacacca 177  Q
    ||||  || ||||||||||||||||||||||    
T  46742717 aaactatgacctactccaccacaacacacca 46742687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 275
Target Start/End: Original strand, 11387854 - 11387884
Alignment:
Q  245 aaccaaaacacacaagaccatcggagaacag 275  Q
    |||||||||||||||||||||||||||||||    
T  11387854 aaccaaaacacacaagaccatcggagaacag 11387884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 46 - 173
Target Start/End: Original strand, 270544 - 270671
Alignment:
Q  46 tacaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcc 145  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  270544 tacaagtcagactcttctctccaccgatccaccaaaacagtatcgtcgacaccactgcaaaaccaccacgtcatcaccaccttcaccttctatcatcgcc 270643  T
Q  146 aaaaccgtgccctactccaccacaacac 173  Q
    ||||||||||||||||||||||||||||    
T  270644 aaaaccgtgccctactccaccacaacac 270671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 252 - 412
Target Start/End: Original strand, 38499614 - 38499774
Alignment:
Q  252 acacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcacaccacca 351  Q
    |||||||||||||||||||||||| |||||||||| | || |||||| ||||| |||| ||||||||||| ||||| |||||||||||||| ||||||||    
T  38499614 acacacaagaccatcggagaacagcaaccttaacgccggcgccgacagatctggcgtttagaggtggtgcagaggattggtgtcactcgtcgcaccacca 38499713  T
Q  352 ccctgaccggctacatcttgcaaattgagggtttggattggggtgaaagaaggtgtaagcg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38499714 ccctgaccggctacatcttgcaaattgagggtttggattggggtggaagaaggtgtaagcg 38499774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 46 - 177
Target Start/End: Original strand, 38499406 - 38499537
Alignment:
Q  46 tacaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcc 145  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||| || |||||||||||||||||||||    
T  38499406 tacaagtcagactcttctctccaccgatccaccaaaacaacatcgtcgacagcactacaaaaccaccacgtcatcgccgccttcaccttctatcatcgcc 38499505  T
Q  146 aaaaccgtgccctactccaccacaacacacca 177  Q
    |||||||||||||||||||| |||||||||||    
T  38499506 aaaaccgtgccctactccactacaacacacca 38499537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 10182274 - 10182403
Alignment:
Q  47 acaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcca 146  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||| |||||    
T  10182274 acaagtcggactcttctctccaccgatccaccaaaa-agcatcgtcgccaccactgcaaaaccaccacgtcatcaccaccttcacctcctatcaccgcca 10182372  T
Q  147 aaaccgtgccctactccaccacaacacacca 177  Q
    |||||||| ||||||||||||||||||||||    
T  10182373 aaaccgtgacctactccaccacaacacacca 10182403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 245 - 409
Target Start/End: Original strand, 10182471 - 10182632
Alignment:
Q  245 aaccaaaacacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcac 344  Q
    ||||||||||||| ||||||||||||||||   ||||||||| |  | | |||| ||||| | || ||||||||||| || ||||||||||||||||| |    
T  10182471 aaccaaaacacacgagaccatcggagaaca---accttaacgccgacgctgacagatctggcatttagaggtggtgcagaagactggtgtcactcgtcgc 10182567  T
Q  345 accaccaccctgaccggctacatcttgcaaattgagggtttggattggggtgaaagaaggtgtaa 409  Q
    ||||||||||| |||| |||||||||  |||||||||| ||||||||| ||| ||||||||||||    
T  10182568 accaccacccttaccgactacatcttataaattgaggggttggattggagtggaagaaggtgtaa 10182632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 34293467 - 34293339
Alignment:
Q  49 aagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgccaaa 148  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||    
T  34293467 aagtcagtctcttctctccaccgatccaccaaaacagcattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctatcaacgccaaa 34293368  T
Q  149 accgtgccctactccaccacaacacacca 177  Q
    | |||||||||||||||||||||||||||    
T  34293367 atcgtgccctactccaccacaacacacca 34293339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 10365989 - 10366122
Alignment:
Q  46 tacaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcc 145  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||  |    
T  10365989 tacaagtcagactcttctctccaccgatccaccaaa-cagcatcatcgacaccattgcaaaacctccgcgtcatcaccaccttcaccttctatcatctgc 10366087  T
Q  146 aaaaccgtgccctactccaccacaacacaccacca 180  Q
    |||||||||||||||||||||||||||| ||||||    
T  10366088 aaaaccgtgccctactccaccacaacaccccacca 10366122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 32979456 - 32979584
Alignment:
Q  49 aagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgccaaa 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||  ||||||||||||||||||| |||||| |||||||    
T  32979456 aagtcagactcttctctccaccgatccaccaaaacagcatcgtcgccaccactgcacaaccaccatgtcatcaccaccttcacctcctatcaccgccaaa 32979555  T
Q  149 accgtgccctactccaccacaacacacca 177  Q
    ||| || ||||||||||||||||||||||    
T  32979556 accatgacctactccaccacaacacacca 32979584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 249 - 396
Target Start/End: Original strand, 32979653 - 32979800
Alignment:
Q  249 aaaacacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcacacca 348  Q
    ||||||||||||||||||||||||||  | |||||||||  || |||||| || || |||| ||||||||||| |||||||||||||||||||| |||||    
T  32979653 aaaacacacaagaccatcggagaacaacatccttaacgttggcgccgacagatatggcgtttagaggtggtgcagaggactggtgtcactcgtcgcacca 32979752  T
Q  349 ccaccctgaccggctacatcttgcaaattgagggtttggattggggtg 396  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  32979753 ccaccctgaccggctacatcttgtaaatcgagggtttgaattggggtg 32979800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 245 - 377
Target Start/End: Original strand, 10366181 - 10366313
Alignment:
Q  245 aaccaaaacacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcac 344  Q
    |||||||||||||||||||||| |||||||| |||||||||||| || || ||| |||||  ||| |||||||||||| ||||||||||||||||||  |    
T  10366181 aaccaaaacacacaagaccatcagagaacagcaaccttaacgtcggcgcctacagatctggtgtttagaggtggtgcgaaggactggtgtcactcgttgc 10366280  T
Q  345 accaccaccctgaccggctacatcttgcaaatt 377  Q
    ||||||||||| || ||||||||||||||||||    
T  10366281 accaccaccctaactggctacatcttgcaaatt 10366313  T

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Target: chr7; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 311 - 411
Target Start/End: Original strand, 36583085 - 36583185
Alignment:
Q  311 agaggtggtgcggaggactggtgtcactcgtcacaccaccaccctgaccggctacatcttgcaaattgagggtttggattggggtgaaagaaggtgtaag 410  Q
    |||||||||| ||||||||||||||||||||| |||||||||||| || | ||||||||||  ||||| ||||||||||| ||||| |||||||||||||    
T  36583085 agaggtggtgtggaggactggtgtcactcgtcgcaccaccaccctaactgactacatcttgtgaattgggggtttggattagggtggaagaaggtgtaag 36583184  T
Q  411 c 411  Q
    |    
T  36583185 c 36583185  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 36583037 - 36583081
Alignment:
Q  52 tcagactcttctctccaccgatccaccaaaacagcatcgtcgaca 96  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||    
T  36583037 tcagactcttctctccaccgatccaccaaaagagcatcatcgaca 36583081  T

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Target: scaffold0725 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 245 - 410
Target Start/End: Original strand, 1495 - 1660
Alignment:
Q  245 aaccaaaacacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcac 344  Q
    ||||||| ||||||||||||||||||||||  |||||||||||  || |||||| ||||| |||| ||||||||||| |||||||||||||||| ||| |    
T  1495 aaccaaaccacacaagaccatcggagaacaacaaccttaacgttggccccgacagatctggcgtttagaggtggtgcagaggactggtgtcactagtcgc 1594  T
Q  345 accaccaccctgaccggctacatcttgcaaattgagggtttggattggggtgaaagaaggtgtaag 410  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||||||||| ||||| |||||||    
T  1595 accaccaccctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaag 1660  T

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Target: scaffold0725; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 1298 - 1426
Alignment:
Q  49 aagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgccaaa 148  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||  ||||||||||||||| |||||||    
T  1298 aagtcagattcttctctccaccgatccaccaaaacagcatcatcgacaccactgcaaaaccaccacgtcatcaccctcttcaccttctatcaacgccaaa 1397  T
Q  149 accgtgccctactccaccacaacacacca 177  Q
    | ||||||||| |||||||||||||||||    
T  1398 atcgtgccctaatccaccacaacacacca 1426  T

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Target: scaffold0088 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 245 - 410
Target Start/End: Original strand, 27411 - 27576
Alignment:
Q  245 aaccaaaacacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcac 344  Q
    ||||||||||||||||||||||||||||||  |||||||| ||  ||||||||| ||||| |||| ||||||||||| |||||||||||||| | ||| |    
T  27411 aaccaaaacacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgc 27510  T
Q  345 accaccaccctgaccggctacatcttgcaaattgagggtttggattggggtgaaagaaggtgtaag 410  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||||||||| ||||| |||||||    
T  27511 accaccaccctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaag 27576  T

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Target: scaffold0088; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 27214 - 27342
Alignment:
Q  49 aagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgccaaa 148  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||||||||| |||||||    
T  27214 aagtcagattcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaatcaccacgtcatcaccctcttcaccttctatcaacgccaaa 27313  T
Q  149 accgtgccctactccaccacaacacacca 177  Q
    | ||||||||||||||||||| |||||||    
T  27314 atcgtgccctactccaccacagcacacca 27342  T

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Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 245 - 409
Target Start/End: Original strand, 1533682 - 1533846
Alignment:
Q  245 aaccaaaacacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcac 344  Q
    |||||||||||| ||||| |||||||||||| |||||||||| |  |  ||||| |||||| ||| |||||||| |||||||||||||||||||| || |    
T  1533682 aaccaaaacacataagactatcggagaacagcaaccttaacgccgacgtcgacaaatctgatgtttagaggtggcgcggaggactggtgtcactcatcgc 1533781  T
Q  345 accaccaccctgaccggctacatcttgcaaattgagggtttggattggggtgaaagaaggtgtaa 409  Q
    |||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  1533782 accatcaccctgaccggctacatcttgtaaattgagggtttcgattggggtgaaagaaggtgtaa 1533846  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 1533483 - 1533613
Alignment:
Q  47 acaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcca 146  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||  |||| |||||    
T  1533483 acaagtcggactcttctctccaccgatccaccaaaacagcatcgtcgccaccactgtaaaaccaccacgtcatcaccaccttcaccttacatcaccgcca 1533582  T
Q  147 aaaccgtgccctactccaccacaacacacca 177  Q
    ||||  || ||||||||||||||||||||||    
T  1533583 aaactatgacctactccaccacaacacacca 1533613  T

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Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 9566999 - 9567128
Alignment:
Q  49 aagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccacc-ttcaccttctatcatcgccaa 147  Q
    |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||    
T  9566999 aagttagactcttctctccatcgattcaccaaaacagcatcgtcgacaccactgcaaaaccaccacgtcgtcaccacctttcaccttctatcaacgccaa 9567098  T
Q  148 aaccgtgccctactccaccacaacacacca 177  Q
    || |||||||||||||||||||||||||||    
T  9567099 aatcgtgccctactccaccacaacacacca 9567128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 245 - 419
Target Start/End: Original strand, 9567197 - 9567368
Alignment:
Q  245 aaccaaaacacacaagaccatcggagaacagtaaccttaacgtcagcaccgacatatctgacgttgagaggtggtgcggaggactggtgtcactcgtcac 344  Q
    ||||||||||||||||||||||||||||||  ||||||||||   ||   || | || || |||| |||||||||||||||||||||||||||||||| |    
T  9567197 aaccaaaacacacaagaccatcggagaacaacaaccttaacgctggcgttgatagatttggcgtttagaggtggtgcggaggactggtgtcactcgtcgc 9567296  T
Q  345 accaccaccctgaccggctacatcttgcaaattgagggtttggattggggtgaaagaaggtgtaagcgacggctg 419  Q
    | ||||||||  || ||||||||||||  |||||||||||||||||||||||   ||||||||||||| ||||||    
T  9567297 aacaccacccgaacaggctacatcttgtgaattgagggtttggattggggtg---gaaggtgtaagcggcggctg 9567368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 11366917 - 11367032
Alignment:
Q  46 tacaagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgcc 145  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||           ||||||||||||||||||||||||||    
T  11366917 tacaagtcagacttttctctccactgatccaccaaaacagcatcgttgacaccactgcaaaac-----------caccaccttcaccttctatcatcgcc 11367005  T
Q  146 aaaaccgtgccctactccaccacaaca 172  Q
    ||||||||||||| |||||||||||||    
T  11367006 aaaaccgtgccctcctccaccacaaca 11367032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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