View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_46 (Length: 475)
Name: NF1498_low_46
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 460
Target Start/End: Original strand, 26427523 - 26427970
Alignment:
| Q |
13 |
gaagcaaaggggttagggttagtcataaactcatccacnnnnnnnttagttgagttcaaaagctcttgttgtggttcctctcttttctcatcgtagcata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427523 |
gaagcaaaggggttagggttagtcataaactcatccacaaaaaaattggttgagttcaaaagctcttgttgtggttcctctcttttctcatcgtagcata |
26427622 |
T |
|
| Q |
113 |
gcttttggcgttttggacatgtcaggtaattggtgaaatcttcctcatttgggaaaatttcattcattgaaacgaagccatcattttgagaagaaaaagt |
212 |
Q |
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| T |
26427623 |
gcttttggcgttttggacatgtcaggtaattggtgaaatcttcctcatttgggaaaatttcattcattgaaacgaagccatcattttgagaagaaaaagt |
26427722 |
T |
|
| Q |
213 |
ggagtcaacaagtagttgatcatcttgacaagggttagggtaagtttcagttgagtaaaaacaaggagtttgaaaaatgaagctttcatctaaaagagaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427723 |
ggagtcaacaagtagttgatcatcttgacaagggttagggtaagtttcagttgagtaaaaacaaggagtttgaaaaatgaagctttcatctaaaagagaa |
26427822 |
T |
|
| Q |
313 |
gtttcattcaaatagttagaggaaaaatggtggttttgttggacaaattgttcttgttcatgatgttgaaaagtagtgatttctgagttgttggtagttt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427823 |
gtttcattcaaatagttagaggaaaaatggtggttttgttggacaaattgttcttgttcatgatgttgaaaagtagtgatttctgagttgttggtagttt |
26427922 |
T |
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| Q |
413 |
gaataggttgataagggtaacaattatagttgaagtatgtgctaagtg |
460 |
Q |
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| T |
26427923 |
gaataggttgataaggataacaattatagttgaagtatgtgctaagtg |
26427970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 28009349 - 28009109
Alignment:
| Q |
22 |
gggttagggttagtcataaactcatccacnnnnnnnttagttgagttcaaaagctcttgttgtggttcctctcttttctcatcgt---agcata---gct |
115 |
Q |
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|||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| || ||||||||||| || | || ||| ||| |
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| T |
28009349 |
gggttagggttagtcacaaactcatccataaaaaaattggttgagttcaaaagctcttgttgtggctcttctcttttctcctcctcatagtatatcagct |
28009250 |
T |
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| Q |
116 |
tttggcgttttggacatgtcag---gtaattggtgaaa------tcttcctcatttgggaaaatttcattcattgaaacgaagccatcattttgagaaga |
206 |
Q |
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| T |
28009249 |
tttggcgttttggacatggaagctggtagttgttgaaaatgaaatcttcctcatttgggaaaatttcattcattgaaacaaagtcatcattttgagaaga |
28009150 |
T |
|
| Q |
207 |
aaaagtggagtcaacaagtagttgatcatcttgacaagggt |
247 |
Q |
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| T |
28009149 |
aaaagtggagtcaacaagtagttgttgatcttgacaagggt |
28009109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 360 - 460
Target Start/End: Complemental strand, 28009053 - 28008950
Alignment:
| Q |
360 |
ttgttcttgttcatgatgttgaaaagtagtgatttctgagttgtt---ggtagtttgaataggttgataagggtaacaattatagttgaagtatgtgcta |
456 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28009053 |
ttgttcttgttcatgatgttgaaaagtggtgatttctgagttgttattggtagtttgagtaggttgataagggtaacaattataattgaagtatgtgcta |
28008954 |
T |
|
| Q |
457 |
agtg |
460 |
Q |
| |
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|||| |
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|
| T |
28008953 |
agtg |
28008950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 28009107 - 28009058
Alignment:
| Q |
279 |
agtttgaaaaatgaagctttcatctaaaagagaagtttcattcaaatagt |
328 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
28009107 |
agtttgaaaaatgaagctttcatctaaaagagaagcttcattgaaatagt |
28009058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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