View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_5 (Length: 769)
Name: NF1498_low_5
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 730; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 19 - 760
Target Start/End: Complemental strand, 1886218 - 1885478
Alignment:
| Q |
19 |
agcgtcaacattacacttgtacctgcctgagattgtttaacccatttctcaacgtgcctgaccgcatgagatacacttgatgtttgttttacctcctgag |
118 |
Q |
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| T |
1886218 |
agcgtcaacattacacttgtacctgcctgagattgtttaacccatttctcaacgtgcctgaccgcatgagatacacttgatgtttgttttacctcctgag |
1886119 |
T |
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| Q |
119 |
cattcttccaacttgaaaacaacatcgtggctctatcacagataacctgacacttgtctgaggtatcattccatattatttctattttttcaaatgatcc |
218 |
Q |
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| T |
1886118 |
cattcttccaacttgaaaacaacatcgtggctctatcacagataacctgacacttgtctgaggtatcattccatattatttctattttttcaaatgatcc |
1886019 |
T |
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| Q |
219 |
acatcagcgtgctaaagattggctgttgtgagggctctaaacgatgcagaattgcaaaaataatagaggagatatcacctggattcaaaatcgcaacagt |
318 |
Q |
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| T |
1886018 |
acatcagcgtgctaaagattggctgttgtgagggctctaaacgatgcagaattgcaaaaata-tagaggagatatcacctggattcaaaatcgcaacagt |
1885920 |
T |
|
| Q |
319 |
tatgtcttaacaaagacccagcagctgccaacattgggcgattttgccacatagaaataatgtgtgcatgttgtcttcgtggtcattatagaacggacac |
418 |
Q |
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| T |
1885919 |
tatgtcttaacaaagacccagcagctgccaacattgggcgattttgccacatagaaataatgtgtgcatgttgtcttcgtggtcattatagaacggacac |
1885820 |
T |
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| Q |
419 |
tgttgggttcaattgactccgttagcctgcagtcgaaccctttgttggaagaaattcgcgagtaactcgccaaagaaagttcttaatcccgtggaagtat |
518 |
Q |
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| T |
1885819 |
tgttgggttcaattgactccgttagcctgcagtcgaaccctttgttggaagaaattcgcgagtaactcgccaaagaaagttcttaatcccgtggaagtat |
1885720 |
T |
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| Q |
519 |
tttgttgcgccaaatttgcttccaattaccatcaattccgtgctgatgagaatttacatccttttccatgatgctcctgtatgcgctacgaacggaatag |
618 |
Q |
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| T |
1885719 |
tttgttgcgccaaatttgcttccaattaccatcaattccgtgctgatgagaatttacatccttttccatgatgctcctgtatgcgctacgaacggaatag |
1885620 |
T |
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| Q |
619 |
atactgtttttctcaagtttccacacacatctatcttgctgcgcggtagaaatcagaggtgttctgcgaatttgataagctgaaatgttgtcaaataaat |
718 |
Q |
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| T |
1885619 |
atactgtttttctcaagtttccacacacatctatcttgctgcgcggtagaaatcagaggtgttctgcgaatttgataagctgaaatgttgtcaaataaat |
1885520 |
T |
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| Q |
719 |
aatattctccatctgccattgtttggtgtatcctttgcttct |
760 |
Q |
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| T |
1885519 |
aatattctccatctgccattgtttggtgtatcctttgtttct |
1885478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 36256820 - 36256769
Alignment:
| Q |
192 |
tattatttctattttttcaaatgatccacatcagcgtgctaaagattggctg |
243 |
Q |
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| T |
36256820 |
tattatttctatttttccaaatgctcaacataagtgtgctaaagattggctg |
36256769 |
T |
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