View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_50 (Length: 462)
Name: NF1498_low_50
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 1518128 - 1517686
Alignment:
| Q |
1 |
cttaatgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtatggaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1518128 |
cttaatgatccttggtcagaaaaacatcaaataaatactggattttactttgcgaggtcgaataacaagaccatatctttgtttgaaatatggaatggaa |
1518029 |
T |
|
| Q |
101 |
tgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttcttgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1518028 |
tgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactaaatgttaggttcttgga |
1517929 |
T |
|
| Q |
201 |
tactctctattttagtggattttgtcaagatagtaaagactttagggcagtgaccactgttcatgccaattgttgtcgaagcatagctgcaaaggtggct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1517928 |
tactctctattttagtggattttgtcaagatagtaaagactttagggaagtgaccactgttcatgccaattgttgtcgaagcatagctgcaaaggtggct |
1517829 |
T |
|
| Q |
301 |
gatttaaaggcagtccttcatgattggaagcaatttaggaggttagacttaaaggttaactctacgataaatatcaattggacaagtcaccaatggtgtt |
400 |
Q |
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| T |
1517828 |
gatttaaaggcagtccttcatgattggaagcaatttaggaggttagacttagaggttaactctacgataaatatcaattggacaagtcaccaatggtgtt |
1517729 |
T |
|
| Q |
401 |
tgaggtcttggtgatgacctaacagaactatgtgtcaatcatc |
443 |
Q |
| |
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| T |
1517728 |
tgaggtcttggtgatgacctaacagaactatgtgtcaatcatc |
1517686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 6 - 347
Target Start/End: Complemental strand, 1512920 - 1512579
Alignment:
| Q |
6 |
tgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtatggaatgaaa |
105 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||||| ||| | |||||| ||||| ||||||||||| |||||||||| ||||||||||| |||| |
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| T |
1512920 |
tgatccttggtcagaaaaacatttgatcaatactggatttttctttgtgaggtcaaataaaaagaccatatccttgtttgaaacatggtatggaaagaaa |
1512821 |
T |
|
| Q |
106 |
gataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttcttggatactc |
205 |
Q |
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|| ||||||||||| ||||||||||||||||||||| |||||||||||| || ||||||| |||||||||| || ||||| ||||| ||||||||||| | |
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| T |
1512820 |
gacaattccacaggtaaaaaggagcaagatgtgcttattgacctcattgaagctggtatatttggacatttagggctcaaggttagattcttggataccc |
1512721 |
T |
|
| Q |
206 |
tctattttagtggattttgtcaagatagtaaagactttagggcagtgaccactgttcatgccaattgttgtcgaagcatagctgcaaaggtggctgattt |
305 |
Q |
| |
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| ||||||||||||||||| ||||| |||||||| |||||||||| || | |||||||||| |||||||||||||| |||| |||||||| ||||| |
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| T |
1512720 |
tttattttagtggattttgccaagacagtaaagatgttagggcagtaacgatcattcatgccaactgttgtcgaagcatcactgcgaaggtggccgattt |
1512621 |
T |
|
| Q |
306 |
aaaggcagtccttcatgattggaagcaatttaggaggttaga |
347 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||| |
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| T |
1512620 |
gaaggcaacccttcgtgattggaagcaatttaggaggttaga |
1512579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 6 - 346
Target Start/End: Complemental strand, 1522486 - 1522146
Alignment:
| Q |
6 |
tgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtatggaatgaaa |
105 |
Q |
| |
|
||||||||||||||||||| ||| | | ||||||||||||| ||| | ||| || || ||||||||||||||||||||||| | |||||||||||||||| |
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| T |
1522486 |
tgatccttggtcagaaaaaaatcgagtcaatactggatttttctttgtgagatcaaacaacaagaccatatctttgtttgagacatggtatggaatgaaa |
1522387 |
T |
|
| Q |
106 |
gataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttcttggatactc |
205 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||| || || |||||||| |||| | |||||||||||||| | |
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| T |
1522386 |
gataatttcacagaaaaaaaggagcaagatgtgcttgaggacctcattaaaggtggtatatttcgagatttgggaatcaaggcaaggttcttggataccc |
1522287 |
T |
|
| Q |
206 |
tctattttagtggattttgtcaagatagtaaagactttagggcagtgaccactgttcatgccaattgttgtcgaagcatagctgcaaaggtggctgattt |
305 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||| || |||||||| ||||||||||||||| | ||||| |||| |||||||||||||| |
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| T |
1522286 |
tctattttagtggattttgccaagatagtaaagattttagggctgtaaccactgtccatgccaattgttgtaggagcatcactgccaaggtggctgattt |
1522187 |
T |
|
| Q |
306 |
aaaggcagtccttcatgattggaagcaatttaggaggttag |
346 |
Q |
| |
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|||| | ||||| ||||||||| |||||||||||||| |
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| T |
1522186 |
aaagaaaacccttcgtgattggaaaagatttaggaggttag |
1522146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 411
Target Start/End: Complemental strand, 16643795 - 16643395
Alignment:
| Q |
5 |
atgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtatggaatgaa |
104 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
16643795 |
atgatccttggtcagaaaaacacagaatcaataccggattttactttgtaaggtccaataacaagaccatatctttgtttgaaacatggtatggaaagaa |
16643696 |
T |
|
| Q |
105 |
agataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttcttggatact |
204 |
Q |
| |
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||| ||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
16643695 |
agacaattccacaggaaaaaaagagcaagatgttcttcttgacctcattagacatggtataattggacacttgggactcaaggttaggttcttggatact |
16643596 |
T |
|
| Q |
205 |
ctctattttagtggattttgtcaagatagtaaagactttagggcagtgaccactgttcatgccaattgttgtcgaagcatagctgcaaaggtggctgatt |
304 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
16643595 |
ctctattttagtggtttttgtcaagatagtaaagattttagggcagtgaccactgttcatgccaattgttgtcgaagtatcactgcaaaggtggctgatt |
16643496 |
T |
|
| Q |
305 |
taaaggcagtccttcatgattggaagcaatttaggaggttagacttaaaggttaactctacgataaatatcaattggacaagtcaccaatggtgtttgag |
404 |
Q |
| |
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||||||||| ||| ||||||||||| ||||||||||||||| ||||||||| ||| || |||| |||||||||||||| || |||||| ||| |
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| T |
16643495 |
taaaggcagccctacatgattggaaaaaatttaggaggttag------aggttaactatacaatggatatgaattggacaagtcatcagtggtgtgtgaa |
16643402 |
T |
|
| Q |
405 |
gtcttgg |
411 |
Q |
| |
|
||||||| |
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|
| T |
16643401 |
gtcttgg |
16643395 |
T |
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