View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_low_52 (Length: 458)
Name: NF1498_low_52
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_52 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 2220612 - 2220983
Alignment:
| Q |
1 |
aaaaaatgtagtagaaaggagtacaagtggagcaaatatttacataattctaggacatgaatcatctcaagatcaaataatggtggcacaatcataaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2220612 |
aaaaaatgtagtagaaaggagtacaagtggagcaaatatttacataattctaggacatgaatcatctcaagatcaaataatggtggcacaatcataaata |
2220711 |
T |
|
| Q |
101 |
atgatcttctcatggaggaatcaaaaccgttcatgcaacaagtttccttccatgttactagtttggtcgtaatatttttcgtcnnnnnnnnntgttttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2220712 |
atgatcttctcatggaggaatcaaaaccattcatacaacaagtttccttccatgttactagtttggtcgtaatatttttcgtc-aaaaaaaatgttttta |
2220810 |
T |
|
| Q |
201 |
atatttcataaatatacaagcacttcaaacaaattctctatgcaacaatatgtttaaaactaaatcaattatgctcaaatgattctcaaagaaccactaa |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2220811 |
aaatttcataaatatacaagcacttcaaacaaattctctatgcaacaatatgtttaaaactaaatcaattatgctcaaatgattctcaaagaaccactaa |
2220910 |
T |
|
| Q |
301 |
tctagttggaattagttgaggaataacaaaacnnnnnnnngtataatttgagctttaatcatccactcacatact |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2220911 |
tctagttggaattagttgaggaataacaaa--caaaaaaagtataatttgagctttaatcatccactcacatact |
2220983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 316
Target Start/End: Complemental strand, 2219468 - 2219440
Alignment:
| Q |
288 |
aaagaaccactaatctagttggaattagt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2219468 |
aaagaaccactaatctagttggaattagt |
2219440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University