View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_53 (Length: 458)

Name: NF1498_low_53
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_53
NF1498_low_53
[»] chr3 (8 HSPs)
chr3 (12-440)||(33385062-33385489)
chr3 (12-182)||(33383931-33384101)
chr3 (12-182)||(33384498-33384668)
chr3 (211-378)||(8714943-8715110)
chr3 (211-378)||(9066830-9066997)
chr3 (258-351)||(17628148-17628241)
chr3 (347-409)||(21022387-21022449)
chr3 (259-317)||(20589540-20589597)
[»] chr1 (6 HSPs)
chr1 (197-384)||(17775316-17775502)
chr1 (212-406)||(20421321-20421515)
chr1 (197-392)||(10014536-10014730)
chr1 (253-316)||(34483427-34483490)
chr1 (197-411)||(12086510-12086723)
chr1 (272-322)||(17621020-17621070)
[»] scaffold0015 (1 HSPs)
scaffold0015 (210-346)||(61310-61446)
[»] chr7 (3 HSPs)
chr7 (210-364)||(15964303-15964456)
chr7 (210-356)||(3090449-3090596)
chr7 (331-411)||(16758819-16758899)
[»] chr8 (3 HSPs)
chr8 (263-406)||(8838754-8838896)
chr8 (278-411)||(17747094-17747227)
chr8 (197-297)||(17746981-17747081)
[»] chr6 (1 HSPs)
chr6 (204-316)||(16174087-16174198)
[»] chr5 (1 HSPs)
chr5 (197-339)||(19412163-19412304)
[»] chr4 (1 HSPs)
chr4 (272-318)||(21414022-21414068)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Original strand, 33385062 - 33385489
Alignment:
Q  12 atgaaagtgttgtcgggacatccgcacatcattaaagttgttggaattagagacgtggagttgcaattcacatcccnnnnnnnngttatttctcaaggat 111  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||    
T  33385062 atgaaaatgttgttgggacatccgcacatcattaaagttgttggaattagagacgtggagttgcaattcacatcccaaaaaaaagttatttcttaaggat 33385161  T
Q  112 gtggtgtatgctactgagataagaaataatctagattctcaatttctaatgaacgaggtgttgatgataatnnnnnnnnnntccatcttaaattgatctt 211  Q
    ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          || ||||||||||||||||    
T  33385162 gtgttgtatgctccagagataagaaataatctagattctcaatttctaatgaacgaggtgttgatgataataaaaaaaaattc-atcttaaattgatctt 33385260  T
Q  212 ttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctctttagaaaatgatatt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33385261 ttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctctttagaaaatgatatt 33385360  T
Q  312 acaaatgcatatacatcgaaagaaacatgaatctcaacaacaccaggtgctaagaaggacttaaaaaatatcagaagcacttcagaatgagatcagaagc 411  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33385361 acaaatgcatatatatcgaaagaaacaagaatctcaacaacaccaggtgctaagaaggacttaaaaaatatcagaagcacttcagaatgagatcagaagc 33385460  T
Q  412 gctttagaatgagatcagaagcatatcat 440  Q
    |||||||||||||||||||||||||||||    
T  33385461 gctttagaatgagatcagaagcatatcat 33385489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 33383931 - 33384101
Alignment:
Q  12 atgaaagtgttgtcgggacatccgcacatcattaaagttgttggaattagagacgtggagttgcaattcacatcccnnnnnnnngttatttctcaaggat 111  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||    
T  33383931 atgaaaatgttgttgggacatccgcacatcattaaagttgttggaattagagacgtggagttgcaattcacatcccaaaaaaaagttatttcttaaggat 33384030  T
Q  112 gtggtgtatgctactgagataagaaataatctagattctcaatttctaatgaacgaggtgttgatgataat 182  Q
    ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33384031 gtgttgtatgctccagagataagaaataatctagattctcaatttctaatgaacgaggtgttgatgataat 33384101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 33384498 - 33384668
Alignment:
Q  12 atgaaagtgttgtcgggacatccgcacatcattaaagttgttggaattagagacgtggagttgcaattcacatcccnnnnnnnngttatttctcaaggat 111  Q
    |||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||    
T  33384498 atgaaaatgttgttgggacatccacacatcattaaagttgttggaattagagacgtggagttgcaattcacatcccaaaaaaaagttatttcttaaggat 33384597  T
Q  112 gtggtgtatgctactgagataagaaataatctagattctcaatttctaatgaacgaggtgttgatgataat 182  Q
    ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33384598 gtgttgtatgctccagagataagaaataatctagattctcaatttctaatgaacgaggtgttgatgataat 33384668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 211 - 378
Target Start/End: Complemental strand, 8715110 - 8714943
Alignment:
Q  211 tttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctctttagaaaatgatat 310  Q
    ||||| ||||||||||||  || || |||  ||||||  || ||||| |||| ||||||| ||||| ||||||||| ||||| |  |||||||| |||||    
T  8715110 tttaaagataacaaacttcgttaaagtaatgagatcagagtgattctgatatgtgttgttctctaaaaagtttcttcaagtgtttgttagaaaaagatat 8715011  T
Q  311 tacaaatgcatatacatcgaaagaaacatgaatctcaacaacaccaggtgctaagaaggacttaaaaa 378  Q
    ||||||||| || | ||| ||  ||||||||||||||| || ||||  ||||||||| ||||| ||||    
T  8715010 tacaaatgcgtagatatcaaattaaacatgaatctcaataataccaaatgctaagaaagacttcaaaa 8714943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 211 - 378
Target Start/End: Complemental strand, 9066997 - 9066830
Alignment:
Q  211 tttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctctttagaaaatgatat 310  Q
    ||||| ||||||||||||  || || |||  ||||||  || ||||| |||| ||||||| ||||| ||||||||| ||||| |  |||||||| |||||    
T  9066997 tttaaagataacaaacttcgttaaagtaatgagatcagagtgattctgatatgtgttgttctctaaaaagtttcttcaagtgtttgttagaaaaagatat 9066898  T
Q  311 tacaaatgcatatacatcgaaagaaacatgaatctcaacaacaccaggtgctaagaaggacttaaaaa 378  Q
    ||||||||| || | ||| ||  ||||||||||||||| || ||||  ||||||||| ||||| ||||    
T  9066897 tacaaatgcgtagatatcaaattaaacatgaatctcaataataccaaatgctaagaaagacttcaaaa 9066830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 351
Target Start/End: Original strand, 17628148 - 17628241
Alignment:
Q  258 aatatatgttgttttctaacaagtttctttaagtgctctttagaaaatgatattacaaatgcatatacatcgaaagaaacatgaatctcaacaa 351  Q
    ||||| |||||| ||||||||| |||||  ||||| |||||| || ||||||||||||||||||  | ||| |||| ||||||||| |||||||    
T  17628148 aatatttgttgtgttctaacaattttctgcaagtgttctttaaaacatgatattacaaatgcattaatatctaaagtaacatgaatatcaacaa 17628241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 21022387 - 21022449
Alignment:
Q  347 aacaacaccaggtgctaagaaggacttaaaaaatatcagaagcacttcagaatgagatcagaa 409  Q
    |||||||||| ||| | |||||||||| ||||  |||||||| ||||||||||||||||||||    
T  21022387 aacaacaccaagtgttgagaaggacttcaaaatgatcagaagtacttcagaatgagatcagaa 21022449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 20589540 - 20589597
Alignment:
Q  259 atatatgttgttttctaacaagtttctttaagtgctctttagaaaatgatattacaaat 317  Q
    ||||||||| ||||||||||||||||||| |||| |||||| || | ||||||||||||    
T  20589540 atatatgtt-ttttctaacaagtttctttgagtgttctttaaaacaagatattacaaat 20589597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 197 - 384
Target Start/End: Original strand, 17775316 - 17775502
Alignment:
Q  197 tcttaaattgatcttttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctct 296  Q
    |||||| ||||| ||||| ||||||||||||| |||||| |||| |||||||  ||||||| || ||||||||  |||||||||||| ||| |||| |||    
T  17775316 tcttaagttgatgttttactgataacaaacttaattgaattaaagagatcaatattattctgatctatgttgtggtctaacaagtttatttgagtgttct 17775415  T
Q  297 ttagaaaatgatattacaaatgcatatacatcgaaagaaacatgaatctcaacaacaccaggtgctaagaaggacttaaaaaatatca 384  Q
    ||||||   ||||||| ||||||||| | |||  ||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||    
T  17775416 ttagaatgagatattaaaaatgcatagatatc-caagaaacatgaatcttaacaacaccaagtgctaagaatgacttcaaaaatatca 17775502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 212 - 406
Target Start/End: Complemental strand, 20421515 - 20421321
Alignment:
Q  212 ttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctctttagaaaatgatatt 311  Q
    ||||||||||||||||| ||| |||||||||||||||  | ||||| |||| ||||||||| |||||||||| ||||||   | | ||||| ||||||||    
T  20421515 ttaatgataacaaacttcatttaaataaatagatcaaattgattcttatatgtgttgttttttaacaagtttttttaagcattttctagaacatgatatt 20421416  T
Q  312 acaaatgcatatacatcgaaagaaacatgaatctcaacaacaccaggtgctaagaaggacttaaaaaatatcagaagcacttcagaatgagatca 406  Q
    |||| |||| | | ||| |||||||||||||||||||||||| || ||| |||||||||||| | ||   |||||||||||  ||||||| ||||    
T  20421415 acaagtgcacaaatatctaaagaaacatgaatctcaacaacatcaagtgttaagaaggactttagaatggtcagaagcactctagaatgaaatca 20421321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 392
Target Start/End: Complemental strand, 10014730 - 10014536
Alignment:
Q  197 tcttaaattgatcttttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctct 296  Q
    |||||| ||| | ||||||||||||||||||| |||||||||||||||||||  | ||| | | |  ||||||||| ||| ||     || |||   |||    
T  10014730 tcttaagttggtattttaatgataacaaacttcattgaaataaatagatcaaattgattatgaaaagtgttgttttttaaaaaaaaaatt-aagcattct 10014632  T
Q  297 ttagaaaatgatattacaaatgcatatacatcgaaagaaacatgaatctcaacaacaccaggtgctaagaaggacttaaaaaatatcagaagcact 392  Q
     ||||| ||||||||||||||||| | | |||  |||||||||||||||||||||||||| |||||||||||||||||| ||   |||||||||||    
T  10014631 ctagaacatgatattacaaatgcacaaatatcttaagaaacatgaatctcaacaacaccaagtgctaagaaggacttaagaatggtcagaagcact 10014536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 34483490 - 34483427
Alignment:
Q  253 attctaatatatgttgttttctaacaagtttctttaagtgctctttagaaaatgatattacaaa 316  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||||  || | |||||||||||    
T  34483490 attctaatatatgttattttctaacaagtttctttgagtgttctttgaaacaggatattacaaa 34483427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 411
Target Start/End: Complemental strand, 12086723 - 12086510
Alignment:
Q  197 tcttaaattgatcttttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctct 296  Q
    |||||| ||||| |||||||||||||||| || ||| ||||||| |||||||  | ||| | |||| |||| |  |||||||||||||| | |||| | |    
T  12086723 tcttaagttgatattttaatgataacaaatttcatttaaataaagagatcaatatgattttgatatgtgttatgatctaacaagtttctctgagtggttt 12086624  T
Q  297 ttagaaaatgatattacaaatgcatatacatcgaaagaaacatgaatctcaacaacaccaggtgctaagaaggacttaaaaaatatcagaagcacttcag 396  Q
     | ||  |   ||||||||||||||| | |||  ||||||||| ||||| ||||| |||| ||| | | |||||||| ||||  ||||||||  |||||     
T  12086623 atggagtaaactattacaaatgcataaatatc-taagaaacataaatcttaacaataccaagtgatgaaaaggacttcaaaacgatcagaagggcttcat 12086525  T
Q  397 aatgagatcagaagc 411  Q
    |||||||| ||||||    
T  12086524 aatgagattagaagc 12086510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 17621020 - 17621070
Alignment:
Q  272 tctaacaagtttctttaagtgctctttagaaaatgatattacaaatgcata 322  Q
    |||||||||||||||| ||||  | |||||| |||||||||||||||||||    
T  17621020 tctaacaagtttctttgagtgtccgttagaacatgatattacaaatgcata 17621070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 346
Target Start/End: Complemental strand, 61446 - 61310
Alignment:
Q  210 ttttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctctttagaaaatgata 309  Q
    ||||| ||||||||||||||||  || |||| ||||||   | ||||| |||| |||||||||||||||| |||| ||||||| ||||||||||| ||||    
T  61446 ttttattgataacaaactttatctaattaaagagatcagaatgattctgatatgtgttgttttctaacaaatttcattaagtgttctttagaaaaagata 61347  T
Q  310 ttacaaatgcatatacatcgaaagaaacatgaatctc 346  Q
    ||||||||| | | | ||  |||||||||||||||||    
T  61346 ttacaaatgtacaaatattcaaagaaacatgaatctc 61310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 364
Target Start/End: Complemental strand, 15964456 - 15964303
Alignment:
Q  210 ttttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctctttagaaaatgata 309  Q
    |||||||||||||||||||||||| | |||| ||||     | ||| | |||| ||||||  ||| ||||||||||||||||  |||||||| || ||||    
T  15964456 ttttaatgataacaaactttattgtattaaagagatttgtataattatgatatgtgttgtgatctgacaagtttctttaagttttctttagagaaggata 15964357  T
Q  310 ttacaaatgcatatacatcgaaagaaacatgaatctcaacaacaccaggtgctaa 364  Q
    ||||||||||| ||| |||  |||||||||||| || |||||||||| |||||||    
T  15964356 ttacaaatgcacatatatc-caagaaacatgaaccttaacaacaccatgtgctaa 15964303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 3090596 - 3090449
Alignment:
Q  210 ttttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaag-tttctttaagtgctctttagaaaatgat 308  Q
    ||||||||||||||||||| ||| || |||| | |||| ||| | | | |||| ||||| ||||||||| | |||||| ||||| | | ||||| |||||    
T  3090596 ttttaatgataacaaacttcattaaattaaagatatcagggtgaatttgatatgtgttgctttctaacatgctttcttcaagtgttatgtagaacatgat 3090497  T
Q  309 attacaaatgcatatacatcgaaagaaacatgaatctcaacaacacca 356  Q
    |||||| ||||| | | ||  |||||||||||||||| ||||||||||    
T  3090496 attacagatgcacaaatattcaaagaaacatgaatcttaacaacacca 3090449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 411
Target Start/End: Complemental strand, 16758899 - 16758819
Alignment:
Q  331 aagaaacatgaatctcaacaacaccaggtgctaagaaggacttaaaaaatatcagaagcacttcagaatgagatcagaagc 411  Q
    ||||||||||||||| |||||||||  | ||||| ||| |||| ||||  |||||||  ||||||||||||||| ||||||    
T  16758899 aagaaacatgaatcttaacaacaccgagggctaataagaacttcaaaatgatcagaactacttcagaatgagatgagaagc 16758819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 406
Target Start/End: Complemental strand, 8838896 - 8838754
Alignment:
Q  263 atgttgttttctaacaagtttcttta-agtgctctttagaaaatgatattacaaatgcatatacatcgaaagaaacatgaatctcaacaacaccaggtgc 361  Q
    |||||||| |||||||||||| |||  |||| |||||||||   ||||||||||||||||||| |||  |||||||||| |||| || ||||||| ||||    
T  8838896 atgttgttatctaacaagtttttttttagtgttctttagaattggatattacaaatgcatatatatc-caagaaacatggatcttaataacaccaagtgc 8838798  T
Q  362 taagaaggacttaaaaaatatcagaagcacttcagaatgagatca 406  Q
    ||| |||||||| ||||  || ||| | |||||||||||||||||    
T  8838797 taaaaaggacttcaaaatgat-agatgtacttcagaatgagatca 8838754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 411
Target Start/End: Original strand, 17747094 - 17747227
Alignment:
Q  278 aagtttctttaagtgctctttagaaaatgatattacaaatgcatatacatcgaaagaaacatgaatctcaacaacaccaggtgctaagaaggacttaaaa 377  Q
    ||||| ||||||||| |||| | |||| ||||| ||||||||| | | |||  | ||||||||||||| || | ||||| ||||||||||||||   | |    
T  17747094 aagttactttaagtgttcttgacaaaaggatataacaaatgcaaaaatatctgatgaaacatgaatcttaatagcaccaagtgctaagaaggacaacata 17747193  T
Q  378 aatatcagaagcacttcagaatgagatcagaagc 411  Q
    || |||| |||||||||| |||||||||||||||    
T  17747194 aaaatcaaaagcacttcaaaatgagatcagaagc 17747227  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 17746981 - 17747081
Alignment:
Q  197 tcttaaattgatcttttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctct 296  Q
    |||||| ||||| ||| ||||||||||||||| |||||||||||  ||||||  | |||||||||  ||||||   |||||||||| ||||||||| |||    
T  17746981 tcttaagttgatgtttcaatgataacaaacttcattgaaataaagtgatcaatatgattctaataagtgttgtgacctaacaagttactttaagtgttct 17747080  T
Q  297 t 297  Q
    |    
T  17747081 t 17747081  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 16174198 - 16174087
Alignment:
Q  204 ttgatcttttaatgataacaaactttattgaa-ataaatagatcaaggttattctaatatatgttgttttctaacaagtttctttaagtgctctttagaa 302  Q
    ||||| |||||||||||| |||||| |||||| |||||  ||||||  | ||| | |||| ||||| |||||||||||||||||| |||| |||||||||    
T  16174198 ttgatgttttaatgataaaaaacttaattgaacataaa--gatcaaaatgattatgatatgtgttgatttctaacaagtttctttgagtgttctttagaa 16174101  T
Q  303 aatgatattacaaa 316  Q
     |||||||||||||    
T  16174100 tatgatattacaaa 16174087  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 339
Target Start/End: Complemental strand, 19412304 - 19412163
Alignment:
Q  197 tcttaaattgatcttttaatgataacaaactttattgaaataaatagatcaaggttattctaatatatg-ttgttttctaacaagtttctttaagtgctc 295  Q
    |||||||||||| |||||| |||||||||||| ||||||||||| |||||||  | | ||  || | || | |||||||||||||||| |||||||| |     
T  19412304 tcttaaattgatgttttaaggataacaaacttcattgaaataaagagatcaaattaaatc--atgtgtgctcgttttctaacaagtttttttaagtgtta 19412207  T
Q  296 tttagaaaatgatattacaaatgcatatacatcgaaagaaacat 339  Q
    |||| || ||||||||| | ||||||| | |||  |||||||||    
T  19412206 tttataacatgatattatagatgcataaatatcccaagaaacat 19412163  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 21414022 - 21414068
Alignment:
Q  272 tctaacaagtttctttaagtgctctttagaaaatgatattacaaatg 318  Q
    |||||||||||||||| || | ||||||||| |||||||||||||||    
T  21414022 tctaacaagtttcttttagcgttctttagaacatgatattacaaatg 21414068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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