View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_low_57 (Length: 442)
Name: NF1498_low_57
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_57 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 9 - 426
Target Start/End: Complemental strand, 40596757 - 40596340
Alignment:
| Q |
9 |
caagaatatctatattaacaatctagtctacaacagtacatagttatctttactcacattaacaactaagttaaagatgcaggatcttgttcatgttaga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40596757 |
caagaatatctatattaacaatctagtctacaacagtacatagttatctttactcacattaacaactaagttaaagatgcaggatcttgttcaagttaga |
40596658 |
T |
|
| Q |
109 |
aacattagaaatgcaaattataagcttgatgaaccagtttattcatcaacagaaatgctcaacttcttaactactactacttcaaatcctttggagtatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40596657 |
aacattagaaatgcaaattataagcttgatgaaccagtttattcatcaacagaaatgctcaacttcttaactactactacttcaaatcctttggagtatc |
40596558 |
T |
|
| Q |
209 |
aagaactaggtgcagcttcagaaccaagtaggttaatgatgcaacattatcatcagcaacattatggttcattacctcattctgaactgagtgattttgg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40596557 |
aagaactaggtgcagcttcagaaccaagtaggttaatgatgcaacattatcatcagcaacattatggttcattacctcattctgaactgagtgattttgg |
40596458 |
T |
|
| Q |
309 |
aaattggagaaacagtgttcctgctccacatcaactcactgatcaatattggttattaaacaatgcaaacaattctctttcttatgtatatggtgctgaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40596457 |
aaattggagaaacagtgttcctgctccacatcaactcactgatcaatattggttattaaacaatgcaaacaattctctttcttatgtatatggtgctgaa |
40596358 |
T |
|
| Q |
409 |
aagcaattaggtttgatg |
426 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
40596357 |
aagcaattaggtttgatg |
40596340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University