View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_59 (Length: 436)
Name: NF1498_low_59
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 46506085 - 46505679
Alignment:
| Q |
18 |
aattggttatgaggaatcatctgcaaataaagagattcacccatcacaatcacaaggaaagaatttggtacattggaattgtttgtgcatgaaatttcaa |
117 |
Q |
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| T |
46506085 |
aattggttatgaggaatcatctgcaaataaagagattcacccatcacaatcacaaggaaagaatttggtacattggaattgtttgtgcatgaaatttcaa |
46505986 |
T |
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| Q |
118 |
caagtcattggctgaaatgtagtgggtgaatctcaaacnnnnnnntgtctcaaattaaaatatctgtttcattaaaatattggtaatgacnnnnnnnnnn |
217 |
Q |
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| T |
46505985 |
caagtcattggctgaaatgtagtgggggaatctcaaacaaaaaa-tgtctcaaattaaaatatctgtttcattaaaatattggtaatgacaaaaaaaaaa |
46505887 |
T |
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| Q |
218 |
nctacaaataaaatatcaaacattcgttgaattagtttctacgattgcatgcagattagaccaattttagaccaaaaatgctaaagttgaaacttttaca |
317 |
Q |
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| T |
46505886 |
-cttcgaataaaatatcaaacattcgttgaattagtttctacgattgcacgcagattagaccaattttagaccaaaaatgctaaagttgaaacttttaca |
46505788 |
T |
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| Q |
318 |
gattctgttgttgctaagattgttattattgatagaattaaagggcatatatgtctagctgataaaaccagaaaacccgaagagtcagaatctgattctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46505787 |
gattctgttgttgctaagattgttattattgatagaattaaagggcatatatgtctagctgataaaaccagaaaacccgaagagtcagaatctgattctt |
46505688 |
T |
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| Q |
418 |
ccctctgtg |
426 |
Q |
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| T |
46505687 |
ccctctgtg |
46505679 |
T |
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