View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_6 (Length: 737)
Name: NF1498_low_6
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 34 - 727
Target Start/End: Original strand, 2810538 - 2811245
Alignment:
| Q |
34 |
caacacatttcttgtcaaaataaaaattctgaatttagattacaagcataaataaattcga------ttaatgttgaatataaaatgtaatggtattgtt |
127 |
Q |
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| T |
2810538 |
caacacatttcttgtcaaaataacaattctgaatttagattacaagcataaataaattcgaagaggattaatgttgaatataaaatgtaatggtattgtt |
2810637 |
T |
|
| Q |
128 |
atgcaaagaaaatagtattgctatccataaccactctgagggacttcaacttttatgggttttgtttggtccaatactttgctttcactaagttcattag |
227 |
Q |
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| T |
2810638 |
atgcaaagaaaatagtattgttatccataactactctgtgggacttcaacttttatgggttttgtttggtccaatactttgctttcactaagttcattag |
2810737 |
T |
|
| Q |
228 |
agttgagttatttcttcatagagattacggataatagtcaatttgcttaacacaacaatatttatattcttctaggctactgacttataaattaacacaa |
327 |
Q |
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| T |
2810738 |
agttgaattatttcttcatagagaatacggataatagtcaatttgcttaacacaacaatatttatattcttctaggctactaacttataaatt-----aa |
2810832 |
T |
|
| Q |
328 |
ataatactcggattttgaggattgaaatctatttttatattgactctttttattctcttcattttttgctaattattattgtnnnnnnnnggttacttca |
427 |
Q |
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| T |
2810833 |
ataatactcggattttgaggattgaaatctatttttatattgactctttttattctcttcattttttgctagttattattgtaaaaaaaaggttacttca |
2810932 |
T |
|
| Q |
428 |
ttgcataaaaaccaaagaatgaagattataagcagaaaatcacaaacatggagatagtttcattaatatgagaaaaagtgggtttaatttcattaatgaa |
527 |
Q |
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| T |
2810933 |
ttgcataaaaaccaaagaatgaagattataagcagaaaatcacaaacatggagataatttcattaatatgagaaaaagtggg-----tttcattaatgaa |
2811027 |
T |
|
| Q |
528 |
aaatataaataaacgaagtaatttcagaaagtaaatgatgatgaacaacatatcacaatcacgataaaag----------gaaagtgtgaaataaagatc |
617 |
Q |
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| T |
2811028 |
aaatataaataaacgaagtaatttcagaaagtaaatgatgatgaataacatatcacaatcatgataaaaggagagtgattgagagtgtgaaagaaagatc |
2811127 |
T |
|
| Q |
618 |
gatagtgtgttatgatc----cgatatggttagatgacgccgtcaattgatgc----atctaatatggttagtgttaggttttcatcaatttcacgcctt |
709 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2811128 |
gatagtgtgttatgatccgatcgatatggttagatgatgccgtcaattgatacatcgatctaatatggtcagtgttaggttttcatcaatttcacgcctt |
2811227 |
T |
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| Q |
710 |
ccttgataataccctttg |
727 |
Q |
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| T |
2811228 |
tcttgataataccctttg |
2811245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 447 - 582
Target Start/End: Original strand, 2808361 - 2808497
Alignment:
| Q |
447 |
tgaagattataagcagaaaatcacaaacatggagatagtttcattaatatgagaaaaagtgggtttaatttcattaatg-aaaaatataaataaacgaag |
545 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||| ||| || ||||| |||| ||| |||||| ||||||| ||||||| |||| |
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| T |
2808361 |
tgaagattataagtagaaaatcacgaacatggagatagtttcattaatctgaaaagaagtgagtttcattaacttaatgaaaaaatagaaataaatgaag |
2808460 |
T |
|
| Q |
546 |
taatttcagaaagtaaatgatgatgaacaacatatca |
582 |
Q |
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| T |
2808461 |
caattttagaaagtaaacgatgatgaacaacatatca |
2808497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 2808205 - 2808320
Alignment:
| Q |
34 |
caacacatttcttgtcaaaataaaaattctgaatttagattacaagcataaataaattc------gattaatgttgaatat-aaaatgtaatggtattgt |
126 |
Q |
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||||| ||||||||| ||||||| || |||||||||||||| |||||||||| |||||| ||||| |||| ||||| ||||| |||||||||||| |
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| T |
2808205 |
caacatatttcttgttaaaataacaaatctgaatttagatttcaagcataaacaaattcgaagatgattagtgttcaatataaaaatttaatggtattgt |
2808304 |
T |
|
| Q |
127 |
tatgcaaagaaaatag |
142 |
Q |
| |
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|||| |||||||||| |
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| T |
2808305 |
tatgttaagaaaatag |
2808320 |
T |
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Back To:
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