View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_64 (Length: 430)
Name: NF1498_low_64
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 2 - 414
Target Start/End: Complemental strand, 26166076 - 26165663
Alignment:
| Q |
2 |
ttttctatcgaaacttaaaatccacgagtttggaactaacttcaagtctgttgaattttgcagtgtattgtattgttgcgattaagcccgctggaaggca |
101 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26166076 |
ttttctatcgaaacttaaaatccatgagtttggaactaacttcaagtctgttgaattttgcagtgtattgtattgttgcgattaagcctgctggaaggca |
26165977 |
T |
|
| Q |
102 |
gattccaattgcttgtgtgagaaacatgatcaatcggttttgttgcttctggagtcttggttaattttgtgttgtacacctcattttctaaggcacaatg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26165976 |
gattccaattgcttgtgtgagaaacatgatcaatcggttttgttgcttctggagtctttgttaattttgtgttgtacacctcattttctaaggcacaatg |
26165877 |
T |
|
| Q |
202 |
gtgcatatgtgtacaaggtttcttatatgtatcacccatttttggctttcaatcaccaaatttgtctatgttctttctgtatagcaatcatttagtttaa |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26165876 |
gtgcatatgtgtacaaggtttcttatatgtatcacccatttttggctttcaatcaccaattttgtctatgttctttctgtatagcaatcatttagtttaa |
26165777 |
T |
|
| Q |
302 |
atg-ttaggcaaatatctgagtttcactctaattaactccacacaaattgtgattaaaataatttattttgattgttttctcttgcactaaaatgtgtgg |
400 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26165776 |
atgtttaggcaaatatctgagtttcactctaattaattccacacaagttgtgattaaaataatttattttgattgttttctcttgcactaaaatgtgtgg |
26165677 |
T |
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| Q |
401 |
tagtgtattgtttt |
414 |
Q |
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|||||||||||||| |
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| T |
26165676 |
tagtgtattgtttt |
26165663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 414
Target Start/End: Complemental strand, 27264412 - 27264338
Alignment:
| Q |
343 |
acaaattgtgattaaaataatttattttgattgttttctctt---gcactaaaatgtgtggtagtgtattgtttt |
414 |
Q |
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|||| ||||||| ||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
27264412 |
acaagttgtgatcaaaataattgattttgattgttttgtcttcttgcactaaaatgtgtggtagtatattgtttt |
27264338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 22900991 - 22901061
Alignment:
| Q |
150 |
ctggagtcttggttaattttgtgttgtacacctcattttctaaggcacaatggtgcatatgtgtacaaggt |
220 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22900991 |
ctggagcctttgttaattttgtgttgtacacctcattttctaaggcacaatggtgaatatgtgtacaaggt |
22901061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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