View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_67 (Length: 426)
Name: NF1498_low_67
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_67 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 43091560 - 43091985
Alignment:
| Q |
1 |
aatgaagaaaagaatatctatcacaatttgaccatagctgtcatgcatgtgtagaatagtttttatctacaccgacacaattatagaaccaaagcaccaa |
100 |
Q |
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| T |
43091560 |
aatgaagaaaagaatatctatcacaatttgaccatagctgtcatgcatgtgtagaatagtttttatctacaccgacacaattatagaaccaaagcaccaa |
43091659 |
T |
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| Q |
101 |
taaacaaactgaaaaataccataatgaatctcaacccttgatttaatccattaactccattttcatcatcagcagctttctgatcatcagaatctgcatc |
200 |
Q |
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| T |
43091660 |
taaacaaactgaaaaataccataatgaatctcaacccttgatttaatccattaactccattttcattatcagcagctttctgatcatcagaatctgcatc |
43091759 |
T |
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| Q |
201 |
tgcatctggtccatctgccggtgagtctgcatcctcatccgccgccggcgccgccttcttcttcttggctttactctttgctgcttttggtgattcagct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091760 |
tgcatctggtccatctgccggtgagtctgcatcctcatccgccgccggcgccgccttcttcttcttggctttactctttgctgcttttggtgattcagct |
43091859 |
T |
|
| Q |
301 |
ggtgctaaatctttctcctccttaactcccttaaacaattctcttggcatcaaaaccttacttatcttatacactacaaaaggatcttgatctattaatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091860 |
ggtgctaaatctttctcctccttaactcccttaaacaattctcttggcatcaaaaccttacttatcttatacactacaaaaggatcttgatctattaatg |
43091959 |
T |
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| Q |
401 |
taccaacaatatttgcagtgttaact |
426 |
Q |
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| T |
43091960 |
taccaacaatatttgcagtgttaact |
43091985 |
T |
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