View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_68 (Length: 425)
Name: NF1498_low_68
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 3 - 406
Target Start/End: Complemental strand, 41867107 - 41866703
Alignment:
| Q |
3 |
tttggaaaaagtgtttgttgatgaattaaatttgctaatttttctaaataattattgaccattgtannnnnnnn-ctgaataaattattggtcattgcaa |
101 |
Q |
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| T |
41867107 |
tttggaaaaagtgtttgatgatgaattaaatttgctaatttttctaaataattattggccattgtatttttttttctgaataaattattggtcattgcaa |
41867008 |
T |
|
| Q |
102 |
gacaatataaacaaactaatgtgtttggtaattttagtttctcatacatcattttatctatgtctacttttttattaaagcgatcaaaatatcataagtt |
201 |
Q |
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| T |
41867007 |
gacaatataaacaaactaatgtgtttggcaattttagtttatcatacatcattttatctatgtctacttttttattaaagcgatcaaaatatcataagtt |
41866908 |
T |
|
| Q |
202 |
ttattgttctaataccattagtcnnnnnnnaagaaatactttgattcataaataaataactacactatctatcaacgtttgatcagcaaaatcatgtaat |
301 |
Q |
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| T |
41866907 |
ttattgttctaataccattagtctttttttaagaaatactttgattcataaataaataactacactatctatcaacgtttgatcaacaaaatcatgtaat |
41866808 |
T |
|
| Q |
302 |
aaaaattgcttaagcttataaaacaagagtttttaattgcagaaataaaaacacatggtgcttatggatatgctttgtggttatttaagggtaaaaatga |
401 |
Q |
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| T |
41866807 |
aaaaattgcttaagcttataaaacaagagtttttaattgcagaaataaaaacacatggtgcttatggatatgctttgtggttatttaagggtaaaaatga |
41866708 |
T |
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| Q |
402 |
acttt |
406 |
Q |
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| T |
41866707 |
acttt |
41866703 |
T |
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