View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_77 (Length: 409)
Name: NF1498_low_77
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Complemental strand, 5067002 - 5066618
Alignment:
| Q |
10 |
acatcatcaaagtgtgaatatgagaaactaatgttaattagacaaaacatttttgtaacaagattttctcagatgagttaaactaagtatgaggtaaaaa |
109 |
Q |
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| T |
5067002 |
acatcatgaaagtgtgaatatgagaaactaatgttaattagacaaaacatttttgtaacaagattttctcagatgagttaaactaagtatgaggtaaaaa |
5066903 |
T |
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| Q |
110 |
atattcattcatgtactttttggtaatttaccctattggttatgattgtaccannnnnnnn-ggtatcactttttgtgtatggcaggtatgggaattttt |
208 |
Q |
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| T |
5066902 |
atattcattcatgtactttttggtaatttaccctattggttatgattgtaacatttttttttggtatcactttttgtgtatggcaggtatgggaattttt |
5066803 |
T |
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| Q |
209 |
tcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagcaaaagggtttgttccaggata |
308 |
Q |
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| T |
5066802 |
tcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagcaaaagggtttgttccaggata |
5066703 |
T |
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| Q |
309 |
ccctcaatccatgttagatatcttaggaaaatgtaacattgcagctgttcatggctccactcacaagtacatgagagggacattg |
393 |
Q |
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| T |
5066702 |
ccctcaatccatgttagatatcttaggaaaatgtaacattgcagctgttcatggctccactcacaagtacatgagagggacattg |
5066618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 188 - 386
Target Start/End: Complemental strand, 975683 - 975485
Alignment:
| Q |
188 |
atggcaggtatgggaattttttcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagc |
287 |
Q |
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| T |
975683 |
atggcaggtttggaagttttttcaaatcacacatacttggcagtcctacaattgtttcaatggatccagagcttaatagatacatattgttgaatgaatc |
975584 |
T |
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| Q |
288 |
aaaagggtttgttccaggataccctcaatccatgttagatatcttaggaaaatgtaacattgcagctgttcatggctccactcacaagtacatgagagg |
386 |
Q |
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| T |
975583 |
aaaaggtcttgttcctggataccctcaatctatgttagatatcttaggaaaatgtaatattgcagctgttcatggctccactcacaagtacatgagagg |
975485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 181 - 386
Target Start/End: Complemental strand, 5591025 - 5590820
Alignment:
| Q |
181 |
tttgtgtatggcaggtatgggaattttttcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatga |
280 |
Q |
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|||||| ||||||||| ||| | |||||||||||| || ||| | || || |||||||| || |||||||||||||| || |||||||||||||| |||| |
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| T |
5591025 |
tttgtgaatggcaggtttggaagttttttcaaatcacatatacttggctgccctacaatagtttcaatggatccagagcttaatagatacatattaatga |
5590926 |
T |
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| Q |
281 |
atgaagcaaaagggtttgttccaggataccctcaatccatgttagatatcttaggaaaatgtaacattgcagctgttcatggctccactcacaagtacat |
380 |
Q |
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| T |
5590925 |
atgaatcaaaaggtcttgttcctggataccctcaatctatgttagatatcttaggaaaatgtaatattgcagcagttcatggctccactcacaagtacat |
5590826 |
T |
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| Q |
381 |
gagagg |
386 |
Q |
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|||||| |
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| T |
5590825 |
gagagg |
5590820 |
T |
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