View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_8 (Length: 683)
Name: NF1498_low_8
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 106 - 666
Target Start/End: Original strand, 41545817 - 41546377
Alignment:
| Q |
106 |
aaaatatcccttcgtagagctttggtagatgcctttcttgaatagatagatatctatttcttatcatgatattttaattgcttttaactcataacagaat |
205 |
Q |
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| T |
41545817 |
aaaatatcccttcgtagagctttggtagatgcctttcttgaatagatagatatctatttcttatcatgatattttaattgcttttaactcataacagaat |
41545916 |
T |
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| Q |
206 |
tagtcattaggctaacaaattaaactaatccaaggtagaaaataattggtgcatattaagatcaaaatgaaccatcaaatttccttcattaatcatacat |
305 |
Q |
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| T |
41545917 |
tagtcattaggctaacaaattaaactaatccaaggtagaaaataattggtgcatattaagatcaaaatgaaccatcaaatttccttcattaatcatacat |
41546016 |
T |
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| Q |
306 |
accactaatgtttacaaccaaaacaaagttactaacaattcatcaaaagacacggagaccgctcgaagtggttcataacacttttgtatttacatccaaa |
405 |
Q |
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| T |
41546017 |
accactaatgtttacaaccaaaacaaagttactaacaattcatcaaaagacacagagaccgctcgaagtggttcataacacttttgtatttacatccaaa |
41546116 |
T |
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| Q |
406 |
ataaagttactaataatacataaaaaagataacaataccacaatagatggttcataactcttttgtgtgtattacatccaaaataaagttactgattact |
505 |
Q |
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| T |
41546117 |
ataaagttactaataatacataaaaaagataacaataccacaatagatggttcataacacttttgtgtgtattacatccaaaataaagttactgattact |
41546216 |
T |
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| Q |
506 |
tcagaaaaaacaagataacaagaagacatcaatcattgtgtgagcctcctgctaatgtcatatgaagtcttcagtgtcctaattgcctgcatgcatggac |
605 |
Q |
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| T |
41546217 |
tcagaaaaaacaagataacaagaagacatcaatcattgtgtgagcctcctgctaatgtcatatgaagtcttcagtgtcctaattgcctgcatgcatggac |
41546316 |
T |
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| Q |
606 |
caatcttttggtctctctggttaatcatcaataccatcacctttatcaataccatcaccct |
666 |
Q |
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| T |
41546317 |
caatcttttggtctctctggttaatcatcaataccatcacctttatcaataccatcaccct |
41546377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 41545725 - 41545773
Alignment:
| Q |
14 |
tatacattgtctcattcccgagttggttcttctgatccaccagttaccg |
62 |
Q |
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| T |
41545725 |
tatacattgtctcattcccgagttggttcttctgatccaccagttaccg |
41545773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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