View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_82 (Length: 401)
Name: NF1498_low_82
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_82 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 42334641 - 42334804
Alignment:
| Q |
1 |
gactgttaccttaaaactaaaaaaggaaataaagacatgaaagtatcacaagctaagcataagcatgttgtaatttatcgtagaaaaagaagaagcttgt |
100 |
Q |
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| T |
42334641 |
gactgttaccttaaaactaaaaaaggaaataaagatatgaaagtatcacaagctaagcataagcatgttgtaatttatcgtagaaaaagaagaagcttgt |
42334740 |
T |
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| Q |
101 |
tgtgattgaataatgaacaaaataaagacagacacaacgtcaaatataactaattaactaacag |
164 |
Q |
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| T |
42334741 |
tgtgattgaataatgaacaaaataaagacagacacaacgtcaaatataactaattaactaacag |
42334804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 155 - 307
Target Start/End: Original strand, 42334819 - 42334968
Alignment:
| Q |
155 |
taactaacagctaacaagttgtaacaccacctccctcaagatagaatgtggatatccaacatgcctagcttgtaatgcatattagagatcctatcttatt |
254 |
Q |
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| T |
42334819 |
taactaacagctaacaagttgtaacacc---tccctcaagatagaatgtggatatccaacatgcctagcttgtaatgcatattagagatcctatcttatt |
42334915 |
T |
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| Q |
255 |
taatacattacttttttgattcagcagtattagtgagctcaagattatttaac |
307 |
Q |
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| T |
42334916 |
taatacattacttttttgattcagcagtattagtgagctcaagattatttaac |
42334968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 302 - 385
Target Start/End: Original strand, 42335816 - 42335899
Alignment:
| Q |
302 |
tttaacaaatagatatagaccagtttgtctcacagtaagtgcagggcggccggtccttaaattttttatgttttggatgaaata |
385 |
Q |
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| T |
42335816 |
tttaacaaatagatatagaccagtttgcctcacagtaagtgcagggcggccggtccttaaattttttatgctttggacgaaata |
42335899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 182 - 336
Target Start/End: Original strand, 51068072 - 51068231
Alignment:
| Q |
182 |
cacctccctcaagatagaatgtggatatccaacatgcctagcttgtaatgcatattagaga----tcctatcttatttaatacattacttttttgattca |
277 |
Q |
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|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||| |
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| T |
51068072 |
cacctccctctagatagaatttggatatccaacatgccaagcttgtaatgcatattagagagccttgctatcttatttaatacattcctttttt-attca |
51068170 |
T |
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| Q |
278 |
gcagtattagtgagctcaagattatttaacaaat--agatatagaccagtttgtctcacag |
336 |
Q |
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| T |
51068171 |
gcagtattagtgagctcaagattatttaacaaatagagatataaaccagtatgcctcacag |
51068231 |
T |
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