View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_86 (Length: 396)
Name: NF1498_low_86
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 518125 - 518516
Alignment:
| Q |
1 |
taagaaaagtgtttctcttggttttgagaaagtgtattctttcaatgggtcattgcttacaaaaatcaacaacactattttcatgcaaggattacaagga |
100 |
Q |
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| T |
518125 |
taagaaaagtgtttctcttggttttgagaaagtgtattctttcaatgggtcattgcttacaaaattcaacaacactattttcatgcaaggattacaagga |
518224 |
T |
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| Q |
101 |
acaaggtatttgataggtgaagacaatggaacatacctaaaggttcctggaaaacaacaatctgttatttcctttaccaaaaaattcaaaccgaatatgc |
200 |
Q |
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| T |
518225 |
acaagctatttgataggtgaagacaatggaacatacctaaaggttcctggaaaacaacaatctgttatttcctttaccaaaaaattcaaaccgaatatgc |
518324 |
T |
|
| Q |
201 |
aaatagcaaaaggagatgggttcccttcaaaggttcttttcaatggagaagagtgttcaattccaacccaattccctatgcaaactgctaaccagcaaaa |
300 |
Q |
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| T |
518325 |
aaatagcaaaaggagatgggttcccttcaaaggttcttttcaatggagaagagtgttcaattccaacccaattccctatgcaaactgctaaccagcaaaa |
518424 |
T |
|
| Q |
301 |
tgtatatttagtacaagaaatattagtcttagttttagcttttacaatgaatcatatcttgtattaggagga-ggatgcaagtgttaacaat |
391 |
Q |
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| T |
518425 |
tgtatatttagtacaagaaatattagtcttagttttagcttttacaatgaatcatatcttgtattaggaggatatatgcaagtgttaacaat |
518516 |
T |
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