View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_87 (Length: 395)
Name: NF1498_low_87
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Original strand, 30286053 - 30286428
Alignment:
| Q |
9 |
caagaatattctagaggctgccttcaatgtaagtatacaacagataagatacaatttatttagtatatacccaatggttttatttaatgtgtgtaaatat |
108 |
Q |
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| T |
30286053 |
caagaatattctagaggctgccttcaatgtaagtatacaacagat-----acaatttatttagtatatactatatggttttatttaatgtgtgtaaatat |
30286147 |
T |
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| Q |
109 |
ttactttgtccttgttacaaaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggcctta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30286148 |
ttactttgtccttgttacaaaatacagtccaattacgaggagatagagagggtgcttatagaagagaatgaacaagagccacaacacaggagaggcctta |
30286247 |
T |
|
| Q |
209 |
ggaaggatgaaaggaggcagcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286248 |
ggaaggatgaaaggaggcagcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctc |
30286347 |
T |
|
| Q |
309 |
cagaaggagtgaatcttccgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaattt |
389 |
Q |
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| T |
30286348 |
cagaaggagtgaatcttctgaatctgaaccaatcaacttgagaaaccagaaacctatctactccaacaagtttggcaattt |
30286428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 128 - 386
Target Start/End: Original strand, 30298632 - 30298887
Alignment:
| Q |
128 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca |
227 |
Q |
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| T |
30298632 |
aaatacaggccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaagat---aggaggca |
30298728 |
T |
|
| Q |
228 |
gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttcc |
327 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||| | |||| || ||||||||||||||||||| ||| ||| |
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| T |
30298729 |
gcagagccaggattcaaatgtaatagtcaaagtatcaagagaacagattgaggaattgagcagacatgcaaaatctagctccagaaggagtggatcctcc |
30298828 |
T |
|
| Q |
328 |
gaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaa |
386 |
Q |
| |
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||||||| |||| |||||||||||| || | |||||||||| |||||| |||||||||| |
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| T |
30298829 |
gaatctgcaccattcaacttgagaagccgcgaacctatctattccaacgagtttggcaa |
30298887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 128 - 334
Target Start/End: Original strand, 30291181 - 30291384
Alignment:
| Q |
128 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggc- |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| || ||||| | |
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| T |
30291181 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcaggagcaagagccacgacacaggagaggccttagg------gataggagaca |
30291274 |
T |
|
| Q |
227 |
--agcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatct |
324 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||| |||||| | ||||||| |||||||| |||||||||| ||| |
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| T |
30291275 |
taagcagagccaggaagcaaatgtaatagtcaaagtgtcaagggaacagattgaggaattgagcagacatgccaaatctagctctagaaggagtgcatcc |
30291374 |
T |
|
| Q |
325 |
tccgaatctg |
334 |
Q |
| |
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|||||||||| |
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|
| T |
30291375 |
tccgaatctg |
30291384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 128 - 386
Target Start/End: Original strand, 30303838 - 30304093
Alignment:
| Q |
128 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca |
227 |
Q |
| |
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||||| || ||||||| |||||||||||||||||||||||||||||||| || ||||| || || |||||||||||||||| || ||||| || |
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| T |
30303838 |
aaatataggccaattatgaggagatagagagggtgcttatagaagagcaggagcaagatccgca---caggagaggccttagg------gataggagaca |
30303928 |
T |
|
| Q |
228 |
---gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctc---cagaaggagtgaa |
321 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| | ||||||| |||||||| || ||||||| | |
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| T |
30303929 |
taagcagagccaggaagcaaatgtaatagtaaaagtatcaagggaacagattgaggaattgagcagacatgccaaatctagctctagtaggaggagtgca |
30304028 |
T |
|
| Q |
322 |
tcttccgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaa |
386 |
Q |
| |
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|| |||||||||| |||| |||||||||||| | |||||||||||| |||||| |||||||||| |
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| T |
30304029 |
tcctccgaatctgcaccattcaacttgagaagtcgcaaacctatctattccaacgagtttggcaa |
30304093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 128 - 334
Target Start/End: Original strand, 30314727 - 30314924
Alignment:
| Q |
128 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca |
227 |
Q |
| |
|
||||| || ||||||| |||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||| || ||||| || |
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| T |
30314727 |
aaatataggccaattatgaggagatagagcgggtccttattgaagagca------agagccacaacacaggagaggccttagg------gataggagaca |
30314814 |
T |
|
| Q |
228 |
---gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatct |
324 |
Q |
| |
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|||||||||||||||| |||||||||| ||||| ||||| ||||||||||| ||| |||||| | ||||||| |||||||| |||||||||| ||| |
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| T |
30314815 |
taagcagagccaggaagcagatgtaatagtcaaagtgtcaagggaacagattgaggaattgagcagacatgccaaatctagctctagaaggagtgcatcc |
30314914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 30314930 - 30315006
Alignment:
| Q |
310 |
agaaggagtgaatcttccgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaa |
386 |
Q |
| |
|
|||||||||| ||| |||||||||| |||| |||||||||||| ||| |||||||||| |||||| |||||||||| |
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| T |
30314930 |
agaaggagtgcatcctccgaatctgcaccattcaacttgagaagccatgaacctatctattccaacgagtttggcaa |
30315006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 30291390 - 30291466
Alignment:
| Q |
310 |
agaaggagtgaatcttccgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaa |
386 |
Q |
| |
|
|||||||||| ||| |||||||||| |||| |||||||||||| || |||||||||| |||||| |||||||||| |
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|
| T |
30291390 |
agaaggagtgcatcctccgaatctgcaccattcaacttgagaagccgtgaacctatctattccaacgagtttggcaa |
30291466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 386
Target Start/End: Original strand, 46809603 - 46809760
Alignment:
| Q |
229 |
cagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttccg |
328 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||||| ||||||||||||||||| |||||||| | | ||||||| || ||||| | || || ||| || | |
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| T |
46809603 |
cagagccaagaagctaatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaaatcaagctcaaagagaagcatatcctctg |
46809702 |
T |
|
| Q |
329 |
aatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaa |
386 |
Q |
| |
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| |||| ||| ||||||||||||||| ||| || |||| ||||||||||||||||| |
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|
| T |
46809703 |
agtctggacccttcaacttgagaaaccgcaaccccctctattccaacaagtttggcaa |
46809760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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