View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_88 (Length: 389)
Name: NF1498_low_88
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_88 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 43637023 - 43636664
Alignment:
| Q |
13 |
aatataacatcaccttcatactctcgtctcttcattctaagttttctataactatcatcataagtaataataatttaaacttgtgttcaatatttgatat |
112 |
Q |
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| T |
43637023 |
aatataacatcaccttcatactctcgtctcttcattctaagttttctataactatcatcataagtaataataatttaaacttgtgttcaatatttgatat |
43636924 |
T |
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| Q |
113 |
attttcacctagccattttcatgtctacaccattagaacatgattacataggtttagcaaataatccttcaatggacaaaacatcttcatctctcaactt |
212 |
Q |
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| T |
43636923 |
attttcacctagccattttcatgtctacaccattagaacatgattacataggtttagcaaataatccttcaatggacaaaacatcttcatctctcaactt |
43636824 |
T |
|
| Q |
213 |
caaggaaactgagctcagactaggcttacctggttgtgaatctcctgatagaaaatcagtttctgctgctggtgctgttggtggagtctctttctttgcc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43636823 |
caaggaaactgagctcagactaggcttacctggttgtgaatctcctgatagaaaatcagtttctgctgctggtgctggtggtggagtctctttctttgcc |
43636724 |
T |
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| Q |
313 |
aacaaagatttgaagagcattaatgtttgttctcctttgaagaaccttgtagctagtgtt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43636723 |
aacaaagatttgaagagcattaatgtttgttctcctttgaagaaccttgtagctagtgtt |
43636664 |
T |
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