View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_9 (Length: 682)

Name: NF1498_low_9
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_9
NF1498_low_9
[»] chr3 (9 HSPs)
chr3 (20-664)||(4141355-4141999)
chr3 (20-157)||(4157675-4157806)
chr3 (151-297)||(3754937-3755085)
chr3 (53-123)||(3754825-3754895)
chr3 (62-126)||(1889345-1889409)
chr3 (380-416)||(3755079-3755115)
chr3 (387-439)||(2677757-2677807)
chr3 (62-126)||(1890811-1890875)
chr3 (512-548)||(3755121-3755157)
[»] chr5 (3 HSPs)
chr5 (188-415)||(11082196-11082412)
chr5 (20-129)||(11082005-11082114)
chr5 (192-265)||(1427278-1427351)


Alignment Details
Target: chr3 (Bit Score: 625; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 20 - 664
Target Start/End: Complemental strand, 4141999 - 4141355
Alignment:
Q  20 actttcaaggctactaattttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4141999 actttcaaggctactaattttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtc 4141900  T
Q  120 acttgagcataggattatttcccatgaaaggttacatgttacttcttggattattaattaattgtcgaatggttttgcatcttcagaaattgctgtcatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4141899 acttgagcataggattatttcccatgaaaggttacatgttatttcttggattattaattaattgtcgaatggttttgcatcttcagaaattgctgtcatt 4141800  T
Q  220 ttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttcacaattatgcattgcattatatggttctttgtt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4141799 ttcatttatattatttctttgttacaggtttttgttctctcgtcatacgttacatttgatatatttcacaattatgcattgcattatatggttctttgtt 4141700  T
Q  320 tggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgctcaaggatgcacaaattttatataa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4141699 tggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgctcaaggatgcacaaatcttatataa 4141600  T
Q  420 tgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcgcaatgggtatataaagaacgacaaagttataggagtgtagagcaaaa 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4141599 tgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcacaatgggtatataaagaacgacaaagttataggagtgtagagcaaaa 4141500  T
Q  520 tgaattacttatattgaactggttttctaccaacaaaggtagtatagtgtctctagagttaactagtgcagatgaataacaagctcattgcatttcaaag 619  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4141499 tgaattacttatattgaactggttttctatcaacaaaggtagtatagtgtctctagagttaactagtgcagatgaataacaagctcattgcatttcaaag 4141400  T
Q  620 aaatactacattttgaataacaatctcattcgcaacgatattctt 664  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4141399 aaatactacattttgaataacaatctcattcgcaacgatattctt 4141355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 4157806 - 4157675
Alignment:
Q  20 actttcaaggctactaattttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtc 119  Q
    ||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||   ||| || ||||||||||||  ||||    
T  4157806 actttgaaggctactaattttaaactaattcctgaagtatgtattgaaagtttaatatcacctagttctcta---taggatgtagatgtagtgc--tgtc 4157712  T
Q  120 acttgagcataggattatttcccatgaaaggttacatg 157  Q
    |||||||||||||||||||||||| |||||||||||||    
T  4157711 acttgagcataggattatttccca-gaaaggttacatg 4157675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 151 - 297
Target Start/End: Original strand, 3754937 - 3755085
Alignment:
Q  151 ttacatgttacttcttggattattaattaattgtcgaatggtt----ttgcatcttcagaaattgctgtcattttcatttatattatttctttgtta-ca 245  Q
    |||||||||| ||| |||||||||||||||| | ||||||  |    ||||| ||||||||| | |||||||||||||||||||||||| |||||||       
T  3754937 ttacatgttatttcatggattattaattaatggacgaatgaatgatattgcagcttcagaaacttctgtcattttcatttatattatttgtttgttattt 3755036  T
Q  246 ggtttttgttctctcgtcatacattacatttgatatatttcacaattatgca 297  Q
    ||||||| |||||   ||||||||||||||||||||| ||||||||| ||||    
T  3755037 ggttttttttctc---tcatacattacatttgatatagttcacaattttgca 3755085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 3754825 - 3754895
Alignment:
Q  53 gaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcactt 123  Q
    |||||||||| ||||||||||||||||||   ||||||||||||| || ||||||| ||||||||||||||    
T  3754825 gaagtctgtggtgaaagtttaatatcaccatcttctctatgctaggatgtagatgtggtgctatgtcactt 3754895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 1889409 - 1889345
Alignment:
Q  62 gttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgag 126  Q
    ||||| ||||| ||||||||| |||||  |||||||||| ||||||| |||||||||||||||||    
T  1889409 gttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 1889345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 3755079 - 3755115
Alignment:
Q  380 ttttgcaatgtatgctcaaggatgcacaaattttata 416  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3755079 ttttgcaatgtatgctcaaggatgcagaaattttata 3755115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 2677807 - 2677757
Alignment:
Q  387 atgtatgctcaaggatgcacaaattttatataatgtttgctacaaatcttgca 439  Q
    ||||||||| ||||||||||||||||  |||||||||| || |||||||||||    
T  2677807 atgtatgcttaaggatgcacaaattt--tataatgtttacttcaaatcttgca 2677757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 1890875 - 1890811
Alignment:
Q  62 gttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgag 126  Q
    ||||| ||||| ||||| ||| |||||  |||||||||| ||||||| || ||||||||||||||    
T  1890875 gttgagagtttgatatcgccttgttcttaatgctagaatgtagatgtggtactatgtcacttgag 1890811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 3755121 - 3755157
Alignment:
Q  512 gagcaaaatgaattacttatattgaactggttttcta 548  Q
    |||| |||||||||||||||| |||||||||||||||    
T  3755121 gagccaaatgaattacttatactgaactggttttcta 3755157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 188 - 415
Target Start/End: Original strand, 11082196 - 11082412
Alignment:
Q  188 atggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttca 287  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||| ||||    
T  11082196 atggttttgtagcttcagaaatttctgtcattttcatttatattatttgtttgtcagaggtttttgttctctcatcatacattacatttgatatagttca 11082295  T
Q  288 caattatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaa 387  Q
    |||||||||||| | ||||||| | ||| ||||   |||||||||||||||          ||| ||||||||| ||| |||||| || ||||||||||     
T  11082296 caattatgcattacgttatatgatacttcgttt-aatttctatgattctaa----------gatatttttcaaaggcattgtaattttcattttttgcat 11082384  T
Q  388 tgtatgctcaaggatgcacaaattttat 415  Q
    ||||||||||||| | ||||||| ||||    
T  11082385 tgtatgctcaaggttacacaaatattat 11082412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 11082005 - 11082114
Alignment:
Q  20 actttcaaggctactaattttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtc 119  Q
    ||||| ||||||| ||||||||||   ||||| ||||||||||||||||||||| |||||||| |||||||||  ||  || ||||||| ||||| ||||    
T  11082005 actttgaaggctaataattttaaagatattccagaagtctgtgttgaaagtttagtatcaccttgttctctatattaagatgtagatgtggtgctttgtc 11082104  T
Q  120 acttgagcat 129  Q
    ||||||||||    
T  11082105 acttgagcat 11082114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 1427351 - 1427278
Alignment:
Q  192 ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcat 265  Q
    ||||||| ||| |||||||||  | ||||||||||||||||| | ||||||| | |||||||||||||| ||||    
T  1427351 ttttgcaacttgagaaattgccattattttcatttatattatatgtttgttagaagtttttgttctctcctcat 1427278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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